RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 CES3Q6UWW8 571 aa15.77■□□□□ 0.12
VPS29-207ENST00000549970 FAM20CQ8IXL6 584 aa15.77■□□□□ 0.12
VPS29-207ENST00000549970 C2orf73Q8N5S3 287 aaPredicted RBP15.77■□□□□ 0.12
VPS29-207ENST00000549970 FLVCR1-AS1Q8TAF5 88 aa15.77■□□□□ 0.12
VPS29-207ENST00000549970 THAP4Q8WY91 577 aa15.77■□□□□ 0.12
VPS29-207ENST00000549970 TCTN2Q96GX1 697 aa15.77■□□□□ 0.12
VPS29-207ENST00000549970 NLNQ9BYT8 704 aa15.77■□□□□ 0.12
VPS29-207ENST00000549970 PPP2R2CQ9Y2T4 447 aa15.77■□□□□ 0.12
VPS29-207ENST00000549970 TCRBV7S3A2A0A539 114 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 ARGFXA6NJG6 315 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 AP3B1O00203 1094 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 NDUFS3O75489 264 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 OR2B3O76000 313 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 RPN2P04844 631 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 RAB40ALP0C0E4 278 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 TPSB2P20231 275 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 AOAHP28039 575 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 PKLRP30613 574 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 RAB28P51157 221 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 KIR2DS3Q14952 304 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 TMED2Q15363 201 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 TPSAB1Q15661 275 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 SLC5A12Q1EHB4 618 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 ASB18Q6ZVZ8 466 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 TAX1BP1Q86VP1 789 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 APLFQ8IW19 511 aaPredicted RBP15.76■□□□□ 0.11
VPS29-207ENST00000549970 DCUN1D3Q8IWE4 304 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 PRELID2Q8N945 189 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 LMNTD1Q8N9Z9 388 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 MFSD3Q96ES6 412 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 SPRTNQ9H040 489 aaPredicted RBP15.76■□□□□ 0.11
VPS29-207ENST00000549970 HOMER3Q9NSC5 361 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 IRAK4Q9NWZ3 460 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 GNPTGQ9UJJ9 305 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 TCFL5Q9UL49 500 aa15.76■□□□□ 0.11
VPS29-207ENST00000549970 MED13Q9UHV7 2174 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 C9J4A7 227 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 GOLGA8KD6RF30 607 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 GOLGA8TH3BQL2 631 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 SLCO2B1O94956 709 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 CAPN1P07384 714 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 CTSBP07858 339 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 HBQ1P09105 142 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 AGXTP21549 392 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 PTGIRP43119 386 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 EIF3BP55884 814 aaKnown RBP15.75■□□□□ 0.11
VPS29-207ENST00000549970 KLRB1Q12918 225 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 NCF4Q15080 339 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 KYNUQ16719 465 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 C1orf189Q5VU69 101 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 LRRC8BQ6P9F7 803 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 UNC5DQ6UXZ4 953 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 MPP5Q8N3R9 675 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 LINC01555Q8NAE3 123 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 GSDMBQ8TAX9 411 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 ADAMTS17Q8TE56 1095 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 SKA2Q8WVK7 121 aaPredicted RBP15.75■□□□□ 0.11
VPS29-207ENST00000549970 IL17FQ96PD4 163 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 PANX3Q96QZ0 392 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 KIFC1Q9BW19 673 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 P2RY12Q9H244 342 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 MRM3Q9HC36 420 aaKnown RBP15.75■□□□□ 0.11
VPS29-207ENST00000549970 ACSS2Q9NR19 701 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 KLHL20Q9Y2M5 609 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 FER1L5A0AVI2 2057 aa15.75■□□□□ 0.11
VPS29-207ENST00000549970 SETXQ7Z333 2677 aaKnown RBP15.75■□□□□ 0.11
VPS29-207ENST00000549970 TNRC6AQ8NDV7 1962 aaKnown RBP15.75■□□□□ 0.11
VPS29-207ENST00000549970 RELNP78509 3460 aa15.74■□□□□ 0.11
VPS29-207ENST00000549970 VAPBO95292 243 aa15.74■□□□□ 0.11
VPS29-207ENST00000549970 PDGFAP04085 211 aa15.74■□□□□ 0.11
VPS29-207ENST00000549970 CBSLP0DN79 551 aa15.74■□□□□ 0.11
VPS29-207ENST00000549970 MAGP20916 626 aa15.74■□□□□ 0.11
VPS29-207ENST00000549970 RPS3P23396 243 aaKnown RBP eCLIP15.74■□□□□ 0.114e-6■■■■□ 22.8
VPS29-207ENST00000549970 ARNTP27540 789 aa15.74■□□□□ 0.11
VPS29-207ENST00000549970 CBSP35520 551 aa15.74■□□□□ 0.11
VPS29-207ENST00000549970 GABRA4P48169 554 aa15.74■□□□□ 0.11
VPS29-207ENST00000549970 CCL11P51671 97 aa15.74■□□□□ 0.11
VPS29-207ENST00000549970 CDK16Q00536 496 aa15.74■□□□□ 0.11
VPS29-207ENST00000549970 GPS1Q13098 491 aa15.74■□□□□ 0.11
VPS29-207ENST00000549970 CTSL3PQ5NE16 218 aa15.74■□□□□ 0.11
VPS29-207ENST00000549970 ZNF385CQ66K41 422 aaPredicted RBP15.74■□□□□ 0.11
VPS29-207ENST00000549970 OTOAQ7RTW8 1153 aa15.74■□□□□ 0.11
VPS29-207ENST00000549970 ZNF655Q8N720 491 aaPredicted RBP15.74■□□□□ 0.11
VPS29-207ENST00000549970 TEX19Q8NA77 164 aa15.74■□□□□ 0.11
VPS29-207ENST00000549970 DPH2Q9BQC3 489 aaPredicted RBP15.74■□□□□ 0.11
VPS29-207ENST00000549970 MENTQ9BUN1 341 aa15.74■□□□□ 0.11
VPS29-207ENST00000549970 CHRNA10Q9GZZ6 450 aa15.74■□□□□ 0.11
VPS29-207ENST00000549970 ING2Q9H160 280 aa15.74■□□□□ 0.11
VPS29-207ENST00000549970 SLC39A10Q9ULF5 831 aa15.74■□□□□ 0.11
VPS29-207ENST00000549970 SOX13Q9UN79 622 aa15.74■□□□□ 0.11
VPS29-207ENST00000549970 RUVBL2Q9Y230 463 aaKnown RBP15.74■□□□□ 0.11
VPS29-207ENST00000549970 AP1M2Q9Y6Q5 423 aa15.74■□□□□ 0.11
VPS29-207ENST00000549970 NBASA2RRP1 2371 aa15.73■□□□□ 0.11
VPS29-207ENST00000549970 H3BMH7 237 aa15.73■□□□□ 0.11
VPS29-207ENST00000549970 ZSCAN9O15535 394 aaPredicted RBP15.73■□□□□ 0.11
VPS29-207ENST00000549970 AVILO75366 819 aa15.73■□□□□ 0.11
VPS29-207ENST00000549970 KRT14P02533 472 aa15.73■□□□□ 0.11
VPS29-207ENST00000549970 CD9P21926 228 aa15.73■□□□□ 0.11
VPS29-207ENST00000549970 FMO4P31512 558 aa15.73■□□□□ 0.11
VPS29-207ENST00000549970 BDKRB1P46663 353 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms