RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 CXorf21Q9HAI6 301 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 CTPS2Q9NRF8 586 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 DNAJC15Q9Y5T4 150 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 ZW10O43264 779 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 NDUFB5O43674 189 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 ANGPTL1O95841 491 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 KCNA5P22460 613 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 CTSKP43235 329 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 LINC01465Q8N7H1 131 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 GLB1L3Q8NCI6 653 aaPredicted RBP15.93■□□□□ 0.14
CUX1-213ENST00000549414 PIK3C3Q8NEB9 887 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 RBM4BQ9BQ04 359 aaKnown RBP15.93■□□□□ 0.14
CUX1-213ENST00000549414 RBM4Q9BWF3 364 aaKnown RBP15.93■□□□□ 0.14
CUX1-213ENST00000549414 MUC13Q9H3R2 512 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 ENOPH1Q9UHY7 261 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 GJD2Q9UKL4 321 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 RUVBL1Q9Y265 456 aaKnown RBP15.93■□□□□ 0.14
CUX1-213ENST00000549414 GVINP1Q7Z2Y8 2422 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 SHANK3Q9BYB0 1731 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 TRMUO75648 421 aaKnown RBP15.93■□□□□ 0.14
CUX1-213ENST00000549414 ITGA2P17301 1181 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 PAICSP22234 425 aaKnown RBP15.93■□□□□ 0.14
CUX1-213ENST00000549414 RPL10P27635 214 aaKnown RBP15.93■□□□□ 0.14
CUX1-213ENST00000549414 CDH12P55289 794 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 SLBPQ14493 270 aaKnown RBP eCLIP15.93■□□□□ 0.14
CUX1-213ENST00000549414 MED22Q15528 200 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 C18orf21Q32NC0 220 aaPredicted RBP15.93■□□□□ 0.14
CUX1-213ENST00000549414 ZNF438Q7Z4V0 828 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 EPHX4Q8IUS5 362 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 ZFP28Q8NHY6 868 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 RAD51AP1Q96B01 352 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 BOCQ9BWV1 1114 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 PRRG3Q9BZD7 231 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 NUAK2Q9H093 628 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 FANCEQ9HB96 536 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 TOR4AQ9NXH8 423 aa15.93■□□□□ 0.14
CUX1-213ENST00000549414 MMP20O60882 483 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 H6PDO95479 791 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 FABP3P05413 133 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 PGRP06401 933 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 MERTKQ12866 999 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 LAPTM4AQ15012 233 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 INAQ16352 499 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 AHSA2Q719I0 299 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 HEATR4Q86WZ0 1026 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 KLHL23Q8NBE8 558 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 CSNK1G1Q9HCP0 422 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 VPS29Q9UBQ0 182 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 SEC14L3Q9UDX4 400 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 DHRS7Q9Y394 339 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 PPP6CO00743 305 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 RAP2AP10114 183 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 ALDH4A1P30038 563 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 USP39Q53GS9 565 aaKnown RBP15.92■□□□□ 0.14
CUX1-213ENST00000549414 RAB41Q5JT25 222 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 TNFAIP8L2Q6P589 184 aaPredicted RBP15.92■□□□□ 0.14
CUX1-213ENST00000549414 VITQ6UXI7 678 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 UTS2BQ765I0 119 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 PDSS2Q86YH6 399 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 OR5AK3PQ8NH89 298 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 TADA1Q96BN2 335 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 ZHX1-C8orf76Q96EF9 292 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 REXO4Q9GZR2 422 aaKnown RBP15.92■□□□□ 0.14
CUX1-213ENST00000549414 COQ6Q9Y2Z9 468 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 TPRP12270 2363 aaKnown RBP15.92■□□□□ 0.14
CUX1-213ENST00000549414 GRID2O43424 1007 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 GALK1P51570 392 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 ANKRD26P1Q6NSI1 321 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 KDELC1Q6UW63 502 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 CEP68Q76N32 757 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 TSPAN33Q86UF1 283 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 CYP4Z2PQ8N1L4 340 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 PTERQ96BW5 349 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 EXD2Q9NVH0 621 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 MANBAO00462 879 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 LDB2O43679 373 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 PCDH7O60245 1069 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 TULP3O75386 442 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 GABBR2O75899 941 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 DNAJB1P25685 340 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 TLX1P31314 330 aaPredicted RBP15.92■□□□□ 0.14
CUX1-213ENST00000549414 CAPGP40121 348 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 NRIP1P48552 1158 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 NADK2Q4G0N4 442 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 GTPBP3Q969Y2 492 aaKnown RBP15.92■□□□□ 0.14
CUX1-213ENST00000549414 PHF21AQ96BD5 680 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 FNDC11Q9BVV2 318 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 ZIM2Q9NZV7 527 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 MTRRQ9UBK8 725 aa15.92■□□□□ 0.14
CUX1-213ENST00000549414 TNFRSF11BO00300 401 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 TPST2O60704 377 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 ACP5P13686 325 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 EEFSECP57772 596 aaKnown RBP15.91■□□□□ 0.14
CUX1-213ENST00000549414 TNFAIP8L3Q5GJ75 292 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 SUSD1Q6UWL2 747 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 CPA6Q8N4T0 437 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 C12orf76Q8N812 135 aaPredicted RBP15.91■□□□□ 0.14
CUX1-213ENST00000549414 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.91■□□□□ 0.14
CUX1-213ENST00000549414 KLHDC9Q8NEP7 349 aa15.91■□□□□ 0.14
CUX1-213ENST00000549414 POF1BQ8WVV4 589 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms