RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 SOCS2O14508 198 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 VILLO15195 856 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 FBXO21O94952 628 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 CD3EP07766 207 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 CPOXP36551 454 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 NR4A2P43354 598 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 AKR1D1P51857 326 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 CASP9P55211 416 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 SLC25A11Q02978 314 aaKnown RBP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 SMU1Q2TAY7 513 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 TRIQKQ629K1 86 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 ZYG11AQ6WRX3 759 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 TRIM48Q8IWZ4 208 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 TP53INP2Q8IXH6 220 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 SVOPQ8N4V2 548 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 CISD2Q8N5K1 135 aaKnown RBP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 CPSF7Q8N684 471 aaKnown RBP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 LINC01465Q8N7H1 131 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 TET1Q8NFU7 2136 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 TWIST2Q8WVJ9 160 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 NACC2Q96BF6 587 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 SLC45A3Q96JT2 553 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 Q96M66 194 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 FBXL18Q96ME1 805 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 YME1L1Q96TA2 773 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 AP5M1Q9H0R1 490 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 RNF208Q9H0X6 261 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 DPEP3Q9H4B8 488 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 ELOVL6Q9H5J4 265 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 SMOXQ9NWM0 555 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 UCKL1Q9NWZ5 548 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 TAS2R13Q9NYV9 303 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 MALT1Q9UDY8 824 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 ZNF221Q9UK13 617 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 TBX21Q9UL17 535 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 OBSL1O75147 1896 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 TDRD15B5MCY1 1934 aaKnown RBP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 GNG14A0A1W2PPG7 69 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 PRORSD1PA6NEY8 169 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 PRR33A8MZF0 331 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 HACD1B0YJ81 288 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 PALM2-AKAP2B1ALY0 433 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 C5orf58C9J3I9 102 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 H3BNH8 94 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 hCG_2039718K7EN88 272 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 FAM189A1O60320 539 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 CLPXO76031 633 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 AHSGP02765 367 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 UGT2B4P06133 528 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 CKMP06732 381 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 ANXA6P08133 673 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 GTF2E2P29084 291 aaKnown RBP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 HOXC12P31275 282 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 DGKQP52824 942 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 WNT3AP56704 352 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 ABATP80404 500 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 KRR1Q13601 381 aaKnown RBP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 DUSP28Q4G0W2 176 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 FAM45BPQ6NSW5 357 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 SLC39A5Q6ZMH5 540 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 MAMDC2Q7Z304 686 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 R3HCC1LQ7Z5L2 792 aaKnown RBP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 ZNF605Q86T29 641 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 GPSM1Q86YR5 675 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 LZTR1Q8N653 840 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 Q8N9G6 341 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 SETD9Q8NE22 299 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 RAB2BQ8WUD1 216 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 FBLIM1Q8WUP2 373 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 S100ZQ8WXG8 99 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 FUBP3Q96I24 572 aaKnown RBP eCLIP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 KCNA7Q96RP8 456 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 CYP2S1Q96SQ9 504 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 ABHD16BQ9H3Z7 469 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 GSX1Q9H4S2 264 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 REEP1Q9H902 201 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 SYTL2Q9HCH5 934 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 FAIMQ9NVQ4 179 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 OXSMQ9NWU1 459 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 ADAM28Q9UKQ2 775 aa5.38□□□□□ -1.55
LIMA1-203ENST00000547825 UBQLN1Q9UMX0 589 aaKnown RBP5.38□□□□□ -1.55
LIMA1-203ENST00000547825 MTCL1Q9Y4B5 1905 aaKnown RBP5.37□□□□□ -1.55
LIMA1-203ENST00000547825 WASH4PA8MWX3 477 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 F8W810 466 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 TSPAN4O14817 238 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 RECQL4O94761 1208 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 SCG5P05408 212 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 TPSB2P20231 275 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 S100A3P33764 101 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 GPD2P43304 727 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 DGKGP49619 791 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 RGS4P49798 205 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 NUDT6P53370 316 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 CD83Q01151 205 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 IL18R1Q13478 541 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 TPSAB1Q15661 275 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 RFX4Q33E94 735 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 INAVAQ3KP66 663 aa5.37□□□□□ -1.55
LIMA1-203ENST00000547825 SPDYE7PQ495Y7 208 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms