RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 PGLSO95336 258 aa15.33■□□□□ 0.04
CUX1-211ENST00000546411 FABP3P05413 133 aa15.33■□□□□ 0.04
CUX1-211ENST00000546411 HLA-EP13747 358 aa15.33■□□□□ 0.04
CUX1-211ENST00000546411 CPOXP36551 454 aa15.33■□□□□ 0.04
CUX1-211ENST00000546411 ACADVLP49748 655 aa15.33■□□□□ 0.04
CUX1-211ENST00000546411 EIF2B2P49770 351 aaKnown RBP15.33■□□□□ 0.04
CUX1-211ENST00000546411 ANXA11P50995 505 aaKnown RBP15.33■□□□□ 0.04
CUX1-211ENST00000546411 CAP1Q01518 475 aa15.33■□□□□ 0.04
CUX1-211ENST00000546411 LMAN2Q12907 356 aa15.33■□□□□ 0.04
CUX1-211ENST00000546411 TNFAIP8L2Q6P589 184 aaPredicted RBP15.33■□□□□ 0.04
CUX1-211ENST00000546411 SUSD1Q6UWL2 747 aa15.33■□□□□ 0.04
CUX1-211ENST00000546411 DUS2Q9NX74 493 aaKnown RBP15.33■□□□□ 0.04
CUX1-211ENST00000546411 KLHL28Q9NXS3 571 aa15.33■□□□□ 0.04
CUX1-211ENST00000546411 TBC1D14Q9P2M4 693 aa15.33■□□□□ 0.04
CUX1-211ENST00000546411 PCDHGA7Q9Y5G6 932 aa15.33■□□□□ 0.04
CUX1-211ENST00000546411 I6L893 689 aaPredicted RBP15.32■□□□□ 0.04
CUX1-211ENST00000546411 PCCBP05166 539 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 DNAJB1P25685 340 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 BNIP3Q12983 259 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 XKR5Q6UX68 686 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 TCAIMQ8N3R3 496 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 C11orf65Q8NCR3 313 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 RHEBL1Q8TAI7 183 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 CCDC3Q9BQI4 270 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 DUSP26Q9BV47 211 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 MTG2Q9H4K7 406 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 ATXN10Q9UBB4 475 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 MANBAO00462 879 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 SLC28A2O43868 658 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 TYRP14679 529 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 ENGP17813 658 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 KRT20P35900 424 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 BDKRB1P46663 353 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 MEF2AQ02078 507 aaPredicted RBP15.32■□□□□ 0.04
CUX1-211ENST00000546411 GK3PQ14409 553 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 RFX4Q33E94 735 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 ATAD3BQ5T9A4 648 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 DENND5AQ6IQ26 1287 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 MED27Q6P2C8 311 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 PAGE2Q7Z2X7 111 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 ARRDC2Q8TBH0 407 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 MTERF3Q96E29 417 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 SLC7A5P2Q9GIP4 190 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 TOR4AQ9NXH8 423 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 VPS29Q9UBQ0 182 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 DNAJB9Q9UBS3 223 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 FBXO10Q9UK96 956 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 SCN1AP35498 2009 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 ARID1BQ8NFD5 2236 aaPredicted RBP15.32■□□□□ 0.04
CUX1-211ENST00000546411 HHLA1C9JL84 531 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 H3BNX3 289 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 C8GP07360 202 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 PTPN2P17706 415 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 ERVPABLB-1P60509 514 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 CDC42P60953 191 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 RGS21Q2M5E4 152 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 SPANXN2Q5MJ10 180 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 PSRC1Q6PGN9 363 aaPredicted RBP15.32■□□□□ 0.04
CUX1-211ENST00000546411 KRT73Q86Y46 540 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 GLB1L3Q8NCI6 653 aaPredicted RBP15.32■□□□□ 0.04
CUX1-211ENST00000546411 MDGA1Q8NFP4 955 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 UBE2E3Q969T4 207 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 MUC13Q9H3R2 512 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 AASDHPPTQ9NRN7 309 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 ANGPT4Q9Y264 503 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 SQORQ9Y6N5 450 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 DLEC1Q9Y238 1755 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 TBC1D3DA0A087WVF3 549 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 TBC1D3IA0A087WXS9 549 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 TBC1D3EA0A087X179 549 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 TBC1D3KA0A087X1G2 549 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 TBC1D3FA6NER0 549 aaPredicted RBP15.32■□□□□ 0.04
CUX1-211ENST00000546411 TBC1D3LB9A6J9 549 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 TNFRSF11BO00300 401 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 STX16O14662 325 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 ADH1CP00326 375 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 SOD2P04179 222 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 TBC1D3HP0C7X1 549 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 TNNI3P19429 210 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 RPL10P27635 214 aaKnown RBP15.32■□□□□ 0.04
CUX1-211ENST00000546411 KCNC1P48547 511 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 FAM189BP81408 668 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 PIGFQ07326 219 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 SEMA3BQ13214 749 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 ANXA8L1Q5VT79 327 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 TBC1D3GQ6DHY5 549 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 TBC1D3CQ6IPX1 549 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 C22orf39Q6P5X5 142 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 TBC1D3Q8IZP1 549 aaPredicted RBP15.32■□□□□ 0.04
CUX1-211ENST00000546411 ADGRG2Q8IZP9 1017 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 LEMD2Q8NC56 503 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 KATNBL1Q9H079 304 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 PCDHGA11Q9Y5H2 935 aa15.32■□□□□ 0.04
CUX1-211ENST00000546411 CSF2RAP15509 400 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 TOP3AQ13472 1001 aaPredicted RBP15.31■□□□□ 0.04
CUX1-211ENST00000546411 PAGE3Q5JUK9 113 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 LSMEM2Q8N112 164 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 TTC29Q8NA56 475 aaPredicted RBP15.31■□□□□ 0.04
CUX1-211ENST00000546411 OR10G6Q8NH81 332 aa15.31■□□□□ 0.04
CUX1-211ENST00000546411 MUS81Q96NY9 551 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms