RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.35□□□□□ -0.11
HOXC11-202ENST00000546378 SYTL2Q9HCH5 934 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 ABCB9Q9NP78 766 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 AIG1Q9NVV5 245 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 SCN3BQ9NY72 215 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 VNN3Q9NY84 501 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 IL37Q9NZH6 218 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 CNOT11Q9UKZ1 510 aaKnown RBP14.35□□□□□ -0.11
HOXC11-202ENST00000546378 CDH9Q9ULB4 789 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 PCDHB14Q9Y5E9 798 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 C2orf81A6NN90 581 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 K7ERQ8 282 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 TPST2O60704 377 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 SPNP16150 400 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 ST13P50502 369 aaKnown RBP14.35□□□□□ -0.11
HOXC11-202ENST00000546378 MLLT6P55198 1093 aaPredicted RBP14.35□□□□□ -0.11
HOXC11-202ENST00000546378 INTS6LQ5JSJ4 861 aaKnown RBP14.35□□□□□ -0.11
HOXC11-202ENST00000546378 LHX8Q68G74 356 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 FOXJ1Q92949 421 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 IMP4Q96G21 291 aaKnown RBP14.35□□□□□ -0.11
HOXC11-202ENST00000546378 SLC9A7Q96T83 725 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 TTYH2Q9BSA4 534 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 AARSD1Q9BTE6 412 aaKnown RBP14.35□□□□□ -0.11
HOXC11-202ENST00000546378 EFCAB9A8MZ26 197 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 SLC22A2O15244 555 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 ULK1O75385 1050 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 KRT8P05787 483 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 PABPC1P11940 636 aaKnown RBP14.35□□□□□ -0.11
HOXC11-202ENST00000546378 STC1P52823 247 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 ERVK-8P63133 956 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 RACK1P63244 317 aaKnown RBP14.35□□□□□ -0.11
HOXC11-202ENST00000546378 TRAF3Q13114 568 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 GANABQ14697 944 aaKnown RBP14.35□□□□□ -0.11
HOXC11-202ENST00000546378 PCBP1Q15365 356 aaKnown RBP eCLIP14.35□□□□□ -0.11
HOXC11-202ENST00000546378 TCEA2Q15560 299 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 PHKG1Q16816 387 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 DGUOKQ16854 277 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 FAM171A1Q5VUB5 890 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 PM20D1Q6GTS8 502 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 CCSAPQ6IQ19 270 aaPredicted RBP14.35□□□□□ -0.11
HOXC11-202ENST00000546378 GLB1LQ6UWU2 654 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 TMEM126BQ8IUX1 230 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 MFSD2AQ8NA29 543 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 MDGA1Q8NFP4 955 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 SELENOMQ8WWX9 145 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 TRIM54Q9BYV2 358 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 EHD3Q9NZN3 535 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 SH3BP4Q9P0V3 963 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 C3orf18Q9UK00 162 aa14.35□□□□□ -0.11
HOXC11-202ENST00000546378 PABPN1LA6NDY0 278 aaKnown RBP14.34□□□□□ -0.11
HOXC11-202ENST00000546378 TMEM221A6NGB7 291 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 BBIP1A8MTZ0 92 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 LOC730098B7Z3J9 87 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 SLC7A4O43246 635 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 STAU1O95793 577 aaKnown RBP14.34□□□□□ -0.11
HOXC11-202ENST00000546378 HSD17B1P14061 328 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 PKMP14618 531 aaKnown RBP14.34□□□□□ -0.11
HOXC11-202ENST00000546378 CDKN2CP42773 168 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 GJA8P48165 433 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 ACADVLP49748 655 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 CRISP3P54108 245 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 GTF2H2Q13888 395 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 RCAN2Q14206 197 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 GTF2H2CQ6P1K8 395 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 KCTD13Q8WZ19 329 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 ZUFSPQ96AP4 578 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 RTP3Q9BQQ7 232 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 TMEM121BQ9BXQ6 578 aaPredicted RBP14.34□□□□□ -0.11
HOXC11-202ENST00000546378 DCSTAMPQ9H295 470 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 GPRC5BQ9NZH0 403 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 ARID1AO14497 2285 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 AP3D1O14617 1153 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 ASNA1O43681 348 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 COQ9O75208 318 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 CCNKO75909 580 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 SLC25A14O95258 325 aaPredicted RBP14.34□□□□□ -0.11
HOXC11-202ENST00000546378 IGHA2P01877 340 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 CDH1P12830 882 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 KCNE1P15382 129 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 PBLDP30039 288 aaPredicted RBP14.34□□□□□ -0.11
HOXC11-202ENST00000546378 KANK2Q63ZY3 851 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 GOLGA7Q7Z5G4 137 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 SLAIN1Q8ND83 568 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 TRMOQ9BU70 441 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 KRT84Q9NSB2 600 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 SNX6Q9UNH7 406 aa14.34□□□□□ -0.11
HOXC11-202ENST00000546378 HHLA1C9JL84 531 aa14.33□□□□□ -0.11
HOXC11-202ENST00000546378 PGRP06401 933 aa14.33□□□□□ -0.11
HOXC11-202ENST00000546378 FHP07954 510 aa14.33□□□□□ -0.11
HOXC11-202ENST00000546378 UROSP10746 265 aa14.33□□□□□ -0.11
HOXC11-202ENST00000546378 PON2Q15165 354 aa14.33□□□□□ -0.11
HOXC11-202ENST00000546378 CTXN3Q4LDR2 81 aa14.33□□□□□ -0.11
HOXC11-202ENST00000546378 MEX3DQ86XN8 651 aaKnown RBP14.33□□□□□ -0.11
HOXC11-202ENST00000546378 TRIM48Q8IWZ4 208 aa14.33□□□□□ -0.11
HOXC11-202ENST00000546378 TTC29Q8NA56 475 aaPredicted RBP14.33□□□□□ -0.11
HOXC11-202ENST00000546378 OTULINQ96BN8 352 aa14.33□□□□□ -0.11
HOXC11-202ENST00000546378 UGT2B28Q9BY64 529 aa14.33□□□□□ -0.11
HOXC11-202ENST00000546378 MFSD1Q9H3U5 465 aa14.33□□□□□ -0.11
HOXC11-202ENST00000546378 ASB8Q9H765 288 aa14.33□□□□□ -0.11
HOXC11-202ENST00000546378 PCTPQ9UKL6 214 aa14.33□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms