RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 WDTC1Q8N5D0 677 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 MRPL43Q8N983 215 aaKnown RBP5.16□□□□□ -1.58
USP28-213ENST00000544967 KBTBD8Q8NFY9 601 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 SUSD6Q92537 303 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 LPPQ93052 612 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 PDXPQ96GD0 296 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 GAD1Q99259 594 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 COLEC11Q9BWP8 271 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 RBCK1Q9BYM8 510 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 NIF3L1Q9GZT8 377 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 WARS2Q9UGM6 360 aaKnown RBP5.16□□□□□ -1.58
USP28-213ENST00000544967 CRYL1Q9Y2S2 319 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 FAM92AA1XBS5 289 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 SLC35F4A4IF30 521 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 PRR23AA6NEV1 266 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 CCRL2O00421 344 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 STX7O15400 261 aaKnown RBP5.16□□□□□ -1.58
USP28-213ENST00000544967 ARHGEF9O43307 516 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 PRKD3O94806 890 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 KCNH1O95259 989 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 DLGAP3O95886 979 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 ALPPP05187 535 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 C2P06681 752 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 MYOGP15173 224 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 GPX3P22352 226 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 CFL1P23528 166 aaKnown RBP5.16□□□□□ -1.58
USP28-213ENST00000544967 EEF1B2P24534 225 aaKnown RBP5.16□□□□□ -1.58
USP28-213ENST00000544967 ATP5F1P24539 256 aaPredicted RBP5.16□□□□□ -1.58
USP28-213ENST00000544967 SHMT2P34897 504 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 PTGS2P35354 604 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 SLC26A3P40879 764 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 RGS7P49802 495 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 CLCN4P51793 760 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 ZNF135P52742 658 aaPredicted RBP5.16□□□□□ -1.58
USP28-213ENST00000544967 RABGGTBP53611 331 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 RAB25P57735 213 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 DYNLT1P63172 113 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 GEN1Q17RS7 908 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 PARP15Q460N3 678 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 FBXO43Q4G163 708 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 RNF19BQ6ZMZ0 732 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 GALNT7Q86SF2 657 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 FAM35AQ86V20 835 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 SLC22A9Q8IVM8 553 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 FBXL6Q8N531 539 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 PQLC3Q8N755 202 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 BEND7Q8N7W2 519 aaPredicted RBP5.16□□□□□ -1.58
USP28-213ENST00000544967 MCFD2Q8NI22 146 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 POMGNT1Q8WZA1 660 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 NXNL1Q96CM4 212 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 MFSD3Q96ES6 412 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 CRELD1Q96HD1 420 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 METTL2AQ96IZ6 378 aaKnown RBP5.16□□□□□ -1.58
USP28-213ENST00000544967 ZFP42Q96MM3 310 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 MUS81Q96NY9 551 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 ZBED2Q9BTP6 218 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 GTPBP2Q9BX10 602 aaKnown RBP5.16□□□□□ -1.58
USP28-213ENST00000544967 S1PR5Q9H228 398 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 RHOJQ9H4E5 214 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 MAGIXQ9H6Y5 334 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 CYP3A43Q9HB55 503 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 TRPV4Q9HBA0 871 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 C3orf14Q9HBI5 128 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 FAM118AQ9NWS6 357 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 NKIRAS2Q9NYR9 191 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 OPTCQ9UBM4 332 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 C3orf18Q9UK00 162 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 FBXW11Q9UKB1 542 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 NME7Q9Y5B8 376 aa5.16□□□□□ -1.58
USP28-213ENST00000544967 CROCCQ5TZA2 2017 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 GOLGA8IPA6NC78 632 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 CCDC154A6NI56 674 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 OR6C75A6NL08 312 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 GRXCR1A8MXD5 290 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 UPK1AO00322 258 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 BRINP1O60477 761 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 SNAP29O95721 258 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 RPS17P08708 135 aaKnown RBP5.15□□□□□ -1.58
USP28-213ENST00000544967 SBK3P0C264 359 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 RAP2AP10114 183 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 ZNF30P17039 623 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 PFKLP17858 780 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 EFNA1P20827 205 aaPredicted RBP5.15□□□□□ -1.58
USP28-213ENST00000544967 GPD1P21695 349 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 TIE1P35590 1138 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 ADH7P40394 386 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 NPY2RP49146 381 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 ETV1P50549 477 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 NRLP54845 237 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 MLLT6P55198 1093 aaPredicted RBP5.15□□□□□ -1.58
USP28-213ENST00000544967 LILRA4P59901 499 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 ISL1P61371 349 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 CLCQ05315 142 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 ADAM15Q13444 863 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 ANGPT1Q15389 498 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 DPYSL2Q16555 572 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 ZNF697Q5TEC3 545 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 TPGS2Q68CL5 300 aa5.15□□□□□ -1.58
USP28-213ENST00000544967 LARP4Q71RC2 724 aaKnown RBP eCLIP5.15□□□□□ -1.58
USP28-213ENST00000544967 GDPD3Q7L5L3 318 aa5.15□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms