RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 SYF2O95926 243 aaKnown RBP16.62■□□□□ 0.25
LIG1-204ENST00000542460 TFEBP19484 476 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 SHMT2P34897 504 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 RAB28P51157 221 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 NOVA1P51513 510 aaKnown RBP16.62■□□□□ 0.25
LIG1-204ENST00000542460 AP1S2P56377 157 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 E2F1Q01094 437 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 PHKG1Q16816 387 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 PPP1R3AQ16821 1122 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 TSNAXIP1Q2TAA8 658 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 SH2D5Q6ZV89 423 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 ISCA2Q86U28 154 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 TRABD2AQ86V40 505 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 AMIGO1Q86WK6 493 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 PLD6Q8N2A8 252 aaKnown RBP16.62■□□□□ 0.25
LIG1-204ENST00000542460 STAG3L4Q8TBR4 150 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 JPH3Q8WXH2 748 aaPredicted RBP16.62■□□□□ 0.25
LIG1-204ENST00000542460 PTERQ96BW5 349 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 AHCYL2Q96HN2 611 aaKnown RBP16.62■□□□□ 0.25
LIG1-204ENST00000542460 CCDC138Q96M89 665 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 GPR78Q96P69 363 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 PKP4Q99569 1192 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 RAB11FIP5Q9BXF6 653 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 ABCG4Q9H172 646 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 VIPAS39Q9H9C1 493 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 TOR4AQ9NXH8 423 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 CIDEBQ9UHD4 219 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 LNPEPQ9UIQ6 1025 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 PLAGL1Q9UM63 463 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 ICKQ9UPZ9 632 aa16.62■□□□□ 0.25
LIG1-204ENST00000542460 DUX1O43812 170 aa16.61■□□□□ 0.25
LIG1-204ENST00000542460 KCNK5O95279 499 aa16.61■□□□□ 0.25
LIG1-204ENST00000542460 MYZAPP0CAP1 466 aa16.61■□□□□ 0.25
LIG1-204ENST00000542460 CDK4P11802 303 aa16.61■□□□□ 0.25
LIG1-204ENST00000542460 AMD1P17707 334 aa16.61■□□□□ 0.25
LIG1-204ENST00000542460 KRT4P19013 534 aa16.61■□□□□ 0.25
LIG1-204ENST00000542460 HSD17B2P37059 387 aa16.61■□□□□ 0.25
LIG1-204ENST00000542460 SIM1P81133 766 aaPredicted RBP16.61■□□□□ 0.25
LIG1-204ENST00000542460 SQSTM1Q13501 440 aa16.61■□□□□ 0.25
LIG1-204ENST00000542460 AMZ1Q400G9 498 aa16.61■□□□□ 0.25
LIG1-204ENST00000542460 FRA10AC1Q70Z53 315 aa16.61■□□□□ 0.25
LIG1-204ENST00000542460 WDR48Q8TAF3 677 aa16.61■□□□□ 0.25
LIG1-204ENST00000542460 RHEBL1Q8TAI7 183 aa16.61■□□□□ 0.25
LIG1-204ENST00000542460 PGM2Q96G03 612 aa16.61■□□□□ 0.25
LIG1-204ENST00000542460 MENTQ9BUN1 341 aa16.61■□□□□ 0.25
LIG1-204ENST00000542460 CENPHQ9H3R5 247 aa16.61■□□□□ 0.25
LIG1-204ENST00000542460 LRRN3Q9H3W5 708 aa16.61■□□□□ 0.25
LIG1-204ENST00000542460 XKR8Q9H6D3 395 aa16.61■□□□□ 0.25
LIG1-204ENST00000542460 ALG9Q9H6U8 611 aa16.61■□□□□ 0.25
LIG1-204ENST00000542460 RDH14Q9HBH5 336 aa16.61■□□□□ 0.25
LIG1-204ENST00000542460 OR6C2Q9NZP2 312 aa16.61■□□□□ 0.25
LIG1-204ENST00000542460 SPATA7Q9P0W8 599 aa16.61■□□□□ 0.25
LIG1-204ENST00000542460 DCDC2Q9UHG0 476 aa16.61■□□□□ 0.25
LIG1-204ENST00000542460 OARD1Q9Y530 152 aa16.61■□□□□ 0.25
LIG1-204ENST00000542460 SPAARA0A1B0GVQ0 90 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 GOLGA6L10A6NI86 522 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 RPLP0P05388 317 aaKnown RBP16.6■□□□□ 0.25
LIG1-204ENST00000542460 PROS1P07225 676 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 GSTA1P08263 222 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 RBP1P09455 135 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 TYRP1P17643 537 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 CD1CP29017 333 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 PKLRP30613 574 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 GLRBP48167 497 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 PPM1FP49593 454 aaPredicted RBP16.6■□□□□ 0.25
LIG1-204ENST00000542460 KPNA2P52292 529 aaKnown RBP16.6■□□□□ 0.25
LIG1-204ENST00000542460 CCL7P80098 99 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 ARHGAP19Q14CB8 494 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 OR4D1Q15615 310 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 CCDC157Q569K6 752 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 GPSM1Q86YR5 675 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 HRASLS2Q9NWW9 162 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 ARL15Q9NXU5 204 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 UTP6Q9NYH9 597 aaKnown RBP16.6■□□□□ 0.25
LIG1-204ENST00000542460 SENP1Q9P0U3 644 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 RNF112Q9ULX5 631 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 APOBEC2Q9Y235 224 aaKnown RBP16.6■□□□□ 0.25
LIG1-204ENST00000542460 A0A1W2PQM1 296 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 MED19A0JLT2 244 aaPredicted RBP16.6■□□□□ 0.25
LIG1-204ENST00000542460 KRT87PA6NCN2 255 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 OR6C74A6NCV1 312 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 ZNF839A8K0R7 811 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 GIPC1O14908 333 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 OPA1O60313 960 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 SLC16A8O95907 504 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 TOP3BO95985 862 aaKnown RBP16.6■□□□□ 0.25
LIG1-204ENST00000542460 CAPZBP47756 277 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 CCT5P48643 541 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 CDKL1Q00532 357 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 SLC18A2Q05940 514 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 TGFBIQ15582 683 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 CYP2A13Q16696 494 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 CLPPQ16740 277 aaPredicted RBP16.6■□□□□ 0.25
LIG1-204ENST00000542460 NKAIN2Q5VXU1 208 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 ANKS6Q68DC2 871 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 SLCO6A1Q86UG4 719 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 OOSP2Q86WS3 158 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 SRRM1Q8IYB3 904 aaKnown RBP16.6■□□□□ 0.25
LIG1-204ENST00000542460 OR2L8Q8NGY9 312 aa16.6■□□□□ 0.25
LIG1-204ENST00000542460 HMGCLL1Q8TB92 370 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms