RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 UNKLQ9H9P5 680 aaKnown RBP8.6□□□□□ -1.03
YBX3-208ENST00000540447 SMURF2Q9HAU4 748 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 ACP6Q9NPH0 428 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 TRAPPC13A5PLN9 417 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 ADAM12O43184 909 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 GRID2O43424 1007 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 RETP07949 1114 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 DGKAP23743 735 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 FOXO4P98177 505 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 IRF8Q02556 426 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 GRIN2CQ14957 1233 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 PEA15Q15121 130 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 SBK1Q52WX2 424 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 ANKRD22Q5VYY1 191 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 ZNF598Q86UK7 904 aaKnown RBP8.6□□□□□ -1.03
YBX3-208ENST00000540447 YIPF7Q8N8F6 280 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 OR10H4Q8NGA5 316 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 NANPQ8TBE9 248 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 CNDP2Q96KP4 475 aaKnown RBP8.6□□□□□ -1.03
YBX3-208ENST00000540447 CTRCQ99895 268 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 OCEL1Q9H607 264 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 CHRAC1Q9NRG0 131 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 FBXO5Q9UKT4 447 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 CPSF4LA6NMK7 179 aaKnown RBP8.6□□□□□ -1.03
YBX3-208ENST00000540447 WDPCPO95876 746 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 PLA2G16P53816 162 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 TDGQ13569 410 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 TMEM44Q2T9K0 475 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 GRHL2Q6ISB3 625 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 IRF2BP1Q8IU81 584 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 SYNE4Q8N205 404 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 SPATA20Q8TB22 786 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 RAD51AP1Q96B01 352 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 C8orf33Q9H7E9 229 aaPredicted RBP8.6□□□□□ -1.03
YBX3-208ENST00000540447 LYARQ9NX58 379 aaKnown RBP8.6□□□□□ -1.03
YBX3-208ENST00000540447 TIMM22Q9Y584 194 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 TEX13CA0A0J9YWL9 993 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 MICAL2O94851 1124 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 NTSP30990 170 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 TLE2Q04725 743 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 LAPTM5Q13571 262 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 GRAPQ13588 217 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 KIAA1614Q5VZ46 1190 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 XRRA1Q6P2D8 792 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 BEND5Q7L4P6 421 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 FAM83AQ86UY5 434 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 GMCL1P1Q8NEA9 526 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 OR2L5Q8NG80 312 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 RAD9AQ99638 391 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 SLC29A1Q99808 456 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 IKZF2Q9UKS7 526 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 HEMK1Q9Y5R4 338 aaPredicted RBP8.6□□□□□ -1.03
YBX3-208ENST00000540447 TLR4O00206 839 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 VILLO15195 856 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 PAPSS2O95340 614 aaPredicted RBP8.6□□□□□ -1.03
YBX3-208ENST00000540447 PRKCGP05129 697 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 TGFB3P10600 412 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 ALDH1B1P30837 517 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 RENBPP51606 427 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 PPP1R8Q12972 351 aaKnown RBP8.6□□□□□ -1.03
YBX3-208ENST00000540447 HEPACAMQ14CZ8 416 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 Q3ZCU0 254 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 GCNT6Q5T4J0 391 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 GLT6D1Q7Z4J2 308 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 ZNF467Q7Z7K2 595 aaPredicted RBP8.6□□□□□ -1.03
YBX3-208ENST00000540447 BEST3Q8N1M1 668 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 SLC41A3Q96GZ6 507 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 IL4I1Q96RQ9 567 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 CLCC1Q96S66 551 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 TTLL2Q9BWV7 592 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 DUSP16Q9BY84 665 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 GPRC5CQ9NQ84 441 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 C14orf105Q9NVL8 296 aa8.6□□□□□ -1.03
YBX3-208ENST00000540447 SALL3Q9BXA9 1300 aa8.59□□□□□ -1.03
YBX3-208ENST00000540447 HMGXB3Q12766 1538 aa8.59□□□□□ -1.03
YBX3-208ENST00000540447 DAPL1A0PJW8 107 aa8.59□□□□□ -1.03
YBX3-208ENST00000540447 ARPC5O15511 151 aa8.59□□□□□ -1.03
YBX3-208ENST00000540447 LYRM1O43325 122 aa8.59□□□□□ -1.03
YBX3-208ENST00000540447 MT-ND2P03891 347 aa8.59□□□□□ -1.03
YBX3-208ENST00000540447 PGAM2P15259 253 aa8.59□□□□□ -1.03
YBX3-208ENST00000540447 SYN1P17600 705 aa8.59□□□□□ -1.03
YBX3-208ENST00000540447 CES1P23141 567 aa8.59□□□□□ -1.03
YBX3-208ENST00000540447 ADH6P28332 368 aa8.59□□□□□ -1.03
YBX3-208ENST00000540447 PBLDP30039 288 aaPredicted RBP8.59□□□□□ -1.03
YBX3-208ENST00000540447 KIR3DL1P43629 444 aa8.59□□□□□ -1.03
YBX3-208ENST00000540447 GNPDA1P46926 289 aa8.59□□□□□ -1.03
YBX3-208ENST00000540447 IDH3GP51553 393 aaPredicted RBP8.59□□□□□ -1.03
YBX3-208ENST00000540447 APLP1P51693 650 aa8.59□□□□□ -1.03
YBX3-208ENST00000540447 TGM3Q08188 693 aa8.59□□□□□ -1.03
YBX3-208ENST00000540447 IFI44LQ53G44 452 aa8.59□□□□□ -1.03
YBX3-208ENST00000540447 WDR53Q7Z5U6 358 aaPredicted RBP8.59□□□□□ -1.03
YBX3-208ENST00000540447 C11orf65Q8NCR3 313 aa8.59□□□□□ -1.03
YBX3-208ENST00000540447 OR7G3Q8NG95 312 aa8.59□□□□□ -1.03
YBX3-208ENST00000540447 ST8SIA4Q92187 359 aa8.59□□□□□ -1.03
YBX3-208ENST00000540447 BIRC7Q96CA5 298 aa8.59□□□□□ -1.03
YBX3-208ENST00000540447 TMEM80Q96HE8 168 aa8.59□□□□□ -1.03
YBX3-208ENST00000540447 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.59□□□□□ -1.03
YBX3-208ENST00000540447 ZBTB26Q9HCK0 441 aa8.59□□□□□ -1.03
YBX3-208ENST00000540447 BOLA1Q9Y3E2 137 aa8.59□□□□□ -1.03
YBX3-208ENST00000540447 RBM7Q9Y580 266 aaKnown RBP8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms