RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 HACD3Q9P035 362 aa12.31□□□□□ -0.44
SFSWAP-208ENST00000539506 VAPAQ9P0L0 249 aa12.31□□□□□ -0.44
SFSWAP-208ENST00000539506 DNMT3BQ9UBC3 853 aaKnown RBP12.31□□□□□ -0.44
SFSWAP-208ENST00000539506 POLR3HQ9Y535 204 aaPredicted RBP12.31□□□□□ -0.44
SFSWAP-208ENST00000539506 MICAL3Q7RTP6 2002 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 MYO1GB0I1T2 1018 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 H7C0S8 307 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 ZNF701M0R085 212 aaPredicted RBP12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 ANKRD28O15084 1053 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 PABPC1P11940 636 aaKnown RBP12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 TTKP33981 857 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 ILF2Q12905 390 aaKnown RBP12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 GTF2H3Q13889 308 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 ABRAXAS2Q15018 415 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 DET1Q7L5Y6 550 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 NANOGNBQ7Z5D8 188 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 GOLGA7Q7Z5G4 137 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 CLDN19Q8N6F1 224 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 OR4F6Q8NGB9 312 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 MAGED4Q96JG8 741 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 ZNF382Q96SR6 550 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 MBOAT4Q96T53 435 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 CLSTN3Q9BQT9 956 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 RIBC2Q9H4K1 309 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 NSUN3Q9H649 340 aaKnown RBP12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 LINC00854A0A1B0GVQ3 168 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 E5RI56 91 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 H7C4K7 107 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 TAPBPO15533 448 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 NDUFS2O75306 463 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 CPNE6O95741 557 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 ZNF24P17028 368 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 CD9P21926 228 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 EPHA2P29317 976 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 GDF5P43026 501 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 EMX1Q04741 257 aaPredicted RBP12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 SMARCB1Q12824 385 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 MADCAM1Q13477 382 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 OXA1LQ15070 435 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 NR6A1Q15406 480 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 SOWAHCQ53LP3 525 aaPredicted RBP12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 CHST9Q7L1S5 443 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 TMEM150AQ86TG1 271 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 C10orf111Q8N326 155 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 PDPRQ8NCN5 879 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 C2orf15Q8WU43 125 aaKnown RBP12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 TSPEARQ8WU66 669 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 OSCP1Q8WVF1 389 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 NODALQ96S42 347 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 ADGRE3Q9BY15 652 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 ABT1Q9ULW3 272 aaKnown RBP12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 OR51B4Q9Y5P0 310 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 CASP8AP2Q9UKL3 1982 aa12.3□□□□□ -0.44
SFSWAP-208ENST00000539506 TRIM64A6NGJ6 449 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 SMAD6O43541 496 aaKnown RBP12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 DEAF1O75398 565 aaPredicted RBP12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 GTF2E2P29084 291 aaKnown RBP12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 PTGER3P43115 390 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 HMGCS1Q01581 520 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 GRIK2Q13002 908 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 RAPSNQ13702 412 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 CTF1Q16619 201 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 FAM151BQ6UXP7 276 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 ZFAND4Q86XD8 727 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 CARNMT1Q8N4J0 409 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 KRTCAP2Q8N6L1 136 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 ZNF555Q8NEP9 628 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 ADAMTS19Q8TE59 1207 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 FAM162AQ96A26 154 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 PLD4Q96BZ4 506 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 ZNF347Q96SE7 839 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 TM6SF2Q9BZW4 377 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 HPS4Q9NQG7 708 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 LEF1Q9UJU2 399 aaPredicted RBP12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 DHRS7Q9Y394 339 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 CCL27Q9Y4X3 112 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 PMF1-BGLAPU3KQ54 211 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 TBX1O43435 398 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 GREM1O60565 184 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 FCGR1AP12314 374 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 MASP1P48740 699 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 PCYT1AP49585 367 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 NEK2P51955 445 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 EMX2Q04743 252 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 VAC14Q08AM6 782 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 PLD1Q13393 1074 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 LAIR1Q6GTX8 287 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 SPATC1Q76KD6 591 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 NPAS4Q8IUM7 802 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 METTL6Q8TCB7 284 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 MCOLN3Q8TDD5 553 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 PIH1D2Q8WWB5 315 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 ALG14Q96F25 216 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 SCLYQ96I15 445 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 CIPCQ9C0C6 399 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 EHD1Q9H4M9 534 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 FARSBQ9NSD9 589 aaKnown RBP12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 LRFN2Q9ULH4 789 aa12.29□□□□□ -0.44
SFSWAP-208ENST00000539506 TMA7Q9Y2S6 64 aaKnown RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms