RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 SNRNP27Q8WVK2 155 aaKnown RBP12.85□□□□□ -0.35
LDLR-203ENST00000535915 GAB3Q8WWW8 586 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 NCLNQ969V3 563 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 SCRN2Q96FV2 425 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 SLC29A3Q9BZD2 475 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 ACPTQ9BZG2 426 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 ING2Q9H160 280 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 TLR9Q9NR96 1032 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 IFT80Q9P2H3 777 aaPredicted RBP12.85□□□□□ -0.35
LDLR-203ENST00000535915 PDE10AQ9Y233 779 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 H0Y858 1186 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 CXCR6O00574 342 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 ELK4P28324 431 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 IST1P53990 364 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 RPS14P62263 151 aaKnown RBP12.85□□□□□ -0.35
LDLR-203ENST00000535915 CTBSQ01459 385 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 HSPA14Q0VDF9 509 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 CBX3Q13185 183 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 DCTN2Q13561 401 aaKnown RBP12.85□□□□□ -0.35
LDLR-203ENST00000535915 RAB39AQ14964 217 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 NEDD8Q15843 81 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 RUNDC3AQ59EK9 446 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 RFLNAQ6ZTI6 216 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 USP45Q70EL2 814 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 HTR3DQ70Z44 454 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 DET1Q7L5Y6 550 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 CPXM2Q8N436 756 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 SELENOMQ8WWX9 145 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 LYSMD1Q96S90 227 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 DCUN1D5Q9BTE7 237 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 YTHDF1Q9BYJ9 559 aaKnown RBP12.85□□□□□ -0.35
LDLR-203ENST00000535915 RMI1Q9H9A7 625 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 ASIC5Q9NY37 505 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 DNAJB9Q9UBS3 223 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 PAIP2BQ9ULR5 123 aaKnown RBP12.85□□□□□ -0.35
LDLR-203ENST00000535915 PDE4DIPQ5VU43 2346 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 A0A0J9YVX5 310 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 B4GALNT1Q00973 533 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 PTSQ03393 145 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 NKG7Q16617 165 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 LRRC73Q5JTD7 316 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 MPP7Q5T2T1 576 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 GPR107Q5VW38 600 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 SUV39H2Q9H5I1 410 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 ZDHHC6Q9H6R6 413 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 SLC6A13Q9NSD5 602 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 UTS2RQ9UKP6 389 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 DLGAP4Q9Y2H0 992 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 PCDHB14Q9Y5E9 798 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 ZNF701M0R085 212 aaPredicted RBP12.84□□□□□ -0.35
LDLR-203ENST00000535915 TEX28O15482 410 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 PRKD3O94806 890 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 HIST1H2AGP0C0S8 130 aaPredicted RBP12.84□□□□□ -0.35
LDLR-203ENST00000535915 OR56A5P0C7T3 313 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 GJA1P17302 382 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 EPORP19235 508 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 HIST1H2ADP20671 130 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 TTKP33981 857 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 HLCSP50747 726 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 NEK2P51955 445 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 PTPN5P54829 565 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 NUP107P57740 925 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 LAPTM5Q13571 262 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 SLC44A4Q53GD3 710 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 HS6ST3Q8IZP7 471 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 CMTM8Q8IZV2 173 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 AURKBQ96GD4 344 aaPredicted RBP12.84□□□□□ -0.35
LDLR-203ENST00000535915 HIST1H2AHQ96KK5 128 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 HIST1H2AJQ99878 128 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 H2AFJQ9BTM1 129 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 YIPF2Q9BWQ6 316 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 ELOVL6Q9H5J4 265 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 SMURF2Q9HAU4 748 aa12.84□□□□□ -0.35
LDLR-203ENST00000535915 PABPN1LA6NDY0 278 aaKnown RBP12.83□□□□□ -0.36
LDLR-203ENST00000535915 AREL1O15033 823 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 B4GAT1O43505 415 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 SCELO95171 688 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 PARNO95453 639 aaKnown RBP12.83□□□□□ -0.36
LDLR-203ENST00000535915 LHCGRP22888 699 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 SHMT2P34897 504 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 MICU2Q8IYU8 434 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 PYCR2Q96C36 320 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 DEFB118Q96PH6 123 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 TSSK3Q96PN8 268 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 TOR3AQ9H497 397 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 KAT8Q9H7Z6 458 aaKnown RBP12.83□□□□□ -0.36
LDLR-203ENST00000535915 SPG21Q9NZD8 308 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 SNX6Q9UNH7 406 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 NOBOXO60393 691 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 HPRP00739 348 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 GSNP06396 782 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 S100A3P33764 101 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 PHC1P78364 1004 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 BOP1Q14137 746 aaKnown RBP12.83□□□□□ -0.36
LDLR-203ENST00000535915 DEFB115Q30KQ5 88 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 PGS1Q32NB8 556 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 C22orf39Q6P5X5 142 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 ANKRD46Q86W74 232 aa12.83□□□□□ -0.36
LDLR-203ENST00000535915 REM2Q8IYK8 340 aaPredicted RBP12.83□□□□□ -0.36
LDLR-203ENST00000535915 HS3ST5Q8IZT8 346 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms