RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 PCDHGB4Q9UN71 923 aa6.49□□□□□ -1.37
USP28-202ENST00000535607 AURKCQ9UQB9 309 aa6.49□□□□□ -1.37
USP28-202ENST00000535607 ACOT9Q9Y305 439 aa6.49□□□□□ -1.37
USP28-202ENST00000535607 Q9Y3F1 56 aa6.49□□□□□ -1.37
USP28-202ENST00000535607 TCAF1Q9Y4C2 921 aa6.49□□□□□ -1.37
USP28-202ENST00000535607 UGT2A1Q9Y4X1 527 aa6.49□□□□□ -1.37
USP28-202ENST00000535607 PCDHGB5Q9Y5G0 923 aa6.49□□□□□ -1.37
USP28-202ENST00000535607 ORC6Q9Y5N6 252 aa6.49□□□□□ -1.37
USP28-202ENST00000535607 MN1Q10571 1320 aaPredicted RBP6.49□□□□□ -1.37
USP28-202ENST00000535607 MCM3APO60318 1980 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 PNMA8CA0A1B0GUJ8 204 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 C2CD4BA6NLJ0 364 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 DBX1A6NMT0 343 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 KCNU1A8MYU2 1149 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 E7ENX8 843 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 M0QYV0 167 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 SOCS2O14508 198 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 KMOO15229 486 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 B4GALT4O60513 344 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 TULP3O75386 442 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 METTL18O95568 372 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 SNAI1O95863 264 aaPredicted RBP6.48□□□□□ -1.37
USP28-202ENST00000535607 PTTG1O95997 202 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 CHEK2O96017 543 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 CCNE2O96020 404 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 NPPAP01160 153 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 C2P06681 752 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 RBP1P09455 135 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 SUPT20HL2P0C7V6 817 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 ZNF888P0CJ79 500 aaPredicted RBP6.48□□□□□ -1.37
USP28-202ENST00000535607 TXNP10599 105 aaKnown RBP6.48□□□□□ -1.37
USP28-202ENST00000535607 CYBAP13498 195 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 GFAPP14136 432 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 AKR1A1P14550 325 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 STMN1P16949 149 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 ZNF182P17025 639 aaPredicted RBP6.48□□□□□ -1.37
USP28-202ENST00000535607 PAX3P23760 479 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 ATP5F1P24539 256 aaPredicted RBP6.48□□□□□ -1.37
USP28-202ENST00000535607 AKAP5P24588 427 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 TRPC1P48995 793 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 GLUD2P49448 558 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 FLT3LGP49771 235 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 NAGLUP54802 743 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 WNT3AP56704 352 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 TUBA1BP68363 451 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 GNA12Q03113 381 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 PRKCZQ05513 592 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 DUSP2Q05923 314 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 BST2Q10589 180 aaKnown RBP6.48□□□□□ -1.37
USP28-202ENST00000535607 IL18R1Q13478 541 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 BFSP2Q13515 415 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 GTF2H3Q13889 308 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 RPS6KA2Q15349 733 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 CYP2A13Q16696 494 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 FAM83EQ2M2I3 478 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 RFX4Q33E94 735 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 GFOD2Q3B7J2 385 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 HSDL1Q3SXM5 330 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 DUSP28Q4G0W2 176 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 CELF3Q5SZQ8 465 aaKnown RBP6.48□□□□□ -1.37
USP28-202ENST00000535607 TAPT1Q6NXT6 567 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 ISLR2Q6UXK2 745 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 TUBA1AQ71U36 451 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 ZNF534Q76KX8 674 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 SLC26A9Q7LBE3 791 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 EFL1Q7Z2Z2 1120 aaKnown RBP6.48□□□□□ -1.37
USP28-202ENST00000535607 HORMAD1Q86X24 394 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 SLC41A1Q8IVJ1 513 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 PELI3Q8N2H9 469 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 ARFGAP1Q8N6T3 406 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 PCDH20Q8N6Y1 951 aaKnown RBP6.48□□□□□ -1.37
USP28-202ENST00000535607 RNF148Q8N7C7 305 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 DNAAF3Q8N9W5 541 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 LSM14AQ8ND56 463 aaKnown RBP6.48□□□□□ -1.37
USP28-202ENST00000535607 ABHD11Q8NFV4 315 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 OR14K1Q8NGZ2 314 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 LILRB4Q8NHJ6 448 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 PPTC7Q8NI37 304 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 STYXQ8WUJ0 223 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 PGBD4Q96DM1 585 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 FAM167AQ96KS9 214 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 VAT1Q99536 393 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 SLC29A1Q99808 456 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 OSBPL10Q9BXB5 764 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 TRIM54Q9BYV2 358 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 RHOJQ9H4E5 214 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 NANOGQ9H9S0 305 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 MEAF6Q9HAF1 191 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 GTSE1Q9NYZ3 720 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 MTRRQ9UBK8 725 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 BAG5Q9UL15 447 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 RUVBL2Q9Y230 463 aaKnown RBP6.48□□□□□ -1.37
USP28-202ENST00000535607 AP3M1Q9Y2T2 418 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 WBP11Q9Y2W2 641 aaKnown RBP6.48□□□□□ -1.37
USP28-202ENST00000535607 KAT6AQ92794 2004 aa6.48□□□□□ -1.37
USP28-202ENST00000535607 TANC1Q9C0D5 1861 aa6.47□□□□□ -1.37
USP28-202ENST00000535607 IGKV6D-21A0A0A0MT36 114 aa6.47□□□□□ -1.37
USP28-202ENST00000535607 J3QRK9 145 aa6.47□□□□□ -1.37
USP28-202ENST00000535607 UBXN8O00124 270 aa6.47□□□□□ -1.37
USP28-202ENST00000535607 TAF4O00268 1085 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms