RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 GBP7Q8N8V2 638 aaPredicted RBP20.45■□□□□ 0.86
VPS28-208ENST00000527797 OR5AR1Q8NGP9 310 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 OR5K2Q8NHB8 316 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 PYCR2Q96C36 320 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 ERP27Q96DN0 273 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 C12orf66Q96MD2 445 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 SLC6A18Q96N87 628 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 KCNA7Q96RP8 456 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 INSM2Q96T92 566 aaPredicted RBP20.45■□□□□ 0.86
VPS28-208ENST00000527797 CCDC28BQ9BUN5 200 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 NTMT1Q9BV86 223 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 NUSAP1Q9BXS6 441 aaKnown RBP20.45■□□□□ 0.86
VPS28-208ENST00000527797 TRIT1Q9H3H1 467 aaKnown RBP20.45■□□□□ 0.86
VPS28-208ENST00000527797 WDR55Q9H6Y2 383 aaPredicted RBP20.45■□□□□ 0.86
VPS28-208ENST00000527797 MEAF6Q9HAF1 191 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 TCF7L2Q9NQB0 619 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 SLC22A14Q9Y267 594 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 DNAJC15Q9Y5T4 150 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 DGKBQ9Y6T7 804 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 GOLGA8QA0A0J9YX86 632 aa20.44■□□□□ 0.86
VPS28-208ENST00000527797 SPTY2D1-AS1A0A0U1RR47 76 aa20.44■□□□□ 0.86
VPS28-208ENST00000527797 GOLGA8OA6NCC3 632 aa20.44■□□□□ 0.86
VPS28-208ENST00000527797 PDZK1P1A8MUH7 402 aa20.44■□□□□ 0.86
VPS28-208ENST00000527797 GOLGA8NF8WBI6 632 aa20.44■□□□□ 0.86
VPS28-208ENST00000527797 CHEK2O96017 543 aa20.44■□□□□ 0.86
VPS28-208ENST00000527797 ENO1P06733 434 aaKnown RBP20.44■□□□□ 0.86
VPS28-208ENST00000527797 AOC1P19801 751 aa20.44■□□□□ 0.86
VPS28-208ENST00000527797 HOXA6P31267 233 aa20.44■□□□□ 0.86
VPS28-208ENST00000527797 INHBCP55103 352 aa20.44■□□□□ 0.86
VPS28-208ENST00000527797 CTBSQ01459 385 aa20.44■□□□□ 0.86
VPS28-208ENST00000527797 TRAF3Q13114 568 aa20.44■□□□□ 0.86
VPS28-208ENST00000527797 NAE1Q13564 534 aa20.44■□□□□ 0.86
VPS28-208ENST00000527797 UAP1L1Q3KQV9 507 aa20.44■□□□□ 0.86
VPS28-208ENST00000527797 YTHDF3Q7Z739 585 aaKnown RBP20.44■□□□□ 0.86
VPS28-208ENST00000527797 DCP2Q8IU60 420 aaKnown RBP20.44■□□□□ 0.86
VPS28-208ENST00000527797 KLHDC8AQ8IYD2 350 aa20.44■□□□□ 0.86
VPS28-208ENST00000527797 TBC1D21Q8IYX1 336 aa20.44■□□□□ 0.86
VPS28-208ENST00000527797 OR4F6Q8NGB9 312 aa20.44■□□□□ 0.86
VPS28-208ENST00000527797 OR56A3Q8NH54 315 aa20.44■□□□□ 0.86
VPS28-208ENST00000527797 CDK15Q96Q40 435 aa20.44■□□□□ 0.86
VPS28-208ENST00000527797 MYLK2Q9H1R3 596 aa20.44■□□□□ 0.86
VPS28-208ENST00000527797 GPR27Q9NS67 375 aa20.44■□□□□ 0.86
VPS28-208ENST00000527797 TRNAU1APQ9NX07 287 aaKnown RBP20.44■□□□□ 0.86
VPS28-208ENST00000527797 PNMA8BQ9ULN7 279 aaPredicted RBP20.44■□□□□ 0.86
VPS28-208ENST00000527797 CFAP20Q9Y6A4 193 aaKnown RBP20.44■□□□□ 0.86
VPS28-208ENST00000527797 FCHO1O14526 889 aa20.43■□□□□ 0.86
VPS28-208ENST00000527797 DCXO43602 365 aa20.43■□□□□ 0.86
VPS28-208ENST00000527797 SERPINA6P08185 405 aa20.43■□□□□ 0.86
VPS28-208ENST00000527797 EBLN1P0CF75 366 aa20.43■□□□□ 0.86
VPS28-208ENST00000527797 ITPKAP23677 461 aa20.43■□□□□ 0.86
VPS28-208ENST00000527797 EPHA3P29320 983 aa20.43■□□□□ 0.86
VPS28-208ENST00000527797 CDC16Q13042 620 aa20.43■□□□□ 0.86
VPS28-208ENST00000527797 METTL21CQ5VZV1 264 aa20.43■□□□□ 0.86
VPS28-208ENST00000527797 LETMD1Q6P1Q0 360 aa20.43■□□□□ 0.86
VPS28-208ENST00000527797 THOC6Q86W42 341 aaKnown RBP20.43■□□□□ 0.86
VPS28-208ENST00000527797 HOMEZQ8IX15 550 aa20.43■□□□□ 0.86
VPS28-208ENST00000527797 SYTL1Q8IYJ3 562 aa20.43■□□□□ 0.86
VPS28-208ENST00000527797 CHCHD4Q8N4Q1 142 aa20.43■□□□□ 0.86
VPS28-208ENST00000527797 CDYL2Q8N8U2 506 aa20.43■□□□□ 0.86
VPS28-208ENST00000527797 DCBLD1Q8N8Z6 715 aa20.43■□□□□ 0.86
VPS28-208ENST00000527797 ZNF480Q8WV37 535 aa20.43■□□□□ 0.86
VPS28-208ENST00000527797 TWIST2Q8WVJ9 160 aa20.43■□□□□ 0.86
VPS28-208ENST00000527797 MED8Q96G25 268 aa20.43■□□□□ 0.86
VPS28-208ENST00000527797 MAELQ96JY0 434 aaKnown RBP20.43■□□□□ 0.86
VPS28-208ENST00000527797 OR52B2Q96RD2 323 aa20.43■□□□□ 0.86
VPS28-208ENST00000527797 FERD3LQ96RJ6 166 aa20.43■□□□□ 0.86
VPS28-208ENST00000527797 TMEM168Q9H0V1 697 aa20.43■□□□□ 0.86
VPS28-208ENST00000527797 PRDM8Q9NQV8 689 aa20.43■□□□□ 0.86
VPS28-208ENST00000527797 TDRKHQ9Y2W6 561 aaKnown RBP20.43■□□□□ 0.86
VPS28-208ENST00000527797 TIMM22Q9Y584 194 aa20.43■□□□□ 0.86
VPS28-208ENST00000527797 CCDC163A0A0D9SF12 145 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 SDHDO14521 159 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 HGFP14210 728 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 DMWDQ09019 674 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 FZD2Q14332 565 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 LSM12Q3MHD2 195 aaKnown RBP20.42■□□□□ 0.86
VPS28-208ENST00000527797 CLNKQ7Z7G1 428 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 MFSD2AQ8NA29 543 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 METTL6Q8TCB7 284 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 HSPA12BQ96MM6 686 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 NMUR2Q9GZQ4 415 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 PFDN4Q9NQP4 134 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 INTS7Q9NVH2 962 aaKnown RBP20.42■□□□□ 0.86
VPS28-208ENST00000527797 ST14Q9Y5Y6 855 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 SLCO1B1Q9Y6L6 691 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 CAPN1P07384 714 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 EPORP19235 508 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 BCKDHBP21953 392 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 AK4P27144 223 aaPredicted RBP20.42■□□□□ 0.86
VPS28-208ENST00000527797 CD38P28907 300 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 HALP42357 657 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 RACK1P63244 317 aaKnown RBP20.42■□□□□ 0.86
VPS28-208ENST00000527797 EIF2B5Q13144 721 aaKnown RBP20.42■□□□□ 0.86
VPS28-208ENST00000527797 PRKG2Q13237 762 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 CLCA4Q14CN2 919 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 NXNQ6DKJ4 435 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 CAPN13Q6MZZ7 669 aaPredicted RBP20.42■□□□□ 0.86
VPS28-208ENST00000527797 WASH2PQ6VEQ5 465 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 DDIASQ8IXT1 998 aa20.42■□□□□ 0.86
VPS28-208ENST00000527797 PPFIBP2Q8ND30 876 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms