RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 AMZ1Q400G9 498 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 TTMPQ5BVD1 217 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 FBXO48Q5FWF7 155 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 N4BP2L1Q5TBK1 243 aaPredicted RBP13.32□□□□□ -0.28
CD44-224ENST00000526669 NKAIN2Q5VXU1 208 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 KLC3Q6P597 504 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 ISCA2Q86U28 154 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 EXOC3L1Q86VI1 746 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 PPFIBP2Q8ND30 876 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 OR9A1PQ8NGU1 263 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 OR10G6Q8NH81 332 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 MCOLN3Q8TDD5 553 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 LCN9Q8WX39 176 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 KIAA1191Q96A73 305 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 RAD51AP1Q96B01 352 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 FAM122AQ96E09 287 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 PGM2Q96G03 612 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 APOPT1Q96IL0 206 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 SMC6Q96SB8 1091 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 EGFL8Q99944 293 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 CCDC3Q9BQI4 270 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 SLC12A9Q9BXP2 914 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 ZMYND15Q9H091 742 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 TFB2MQ9H5Q4 396 aaKnown RBP13.32□□□□□ -0.28
CD44-224ENST00000526669 PARVBQ9HBI1 364 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 ABCF3Q9NUQ8 709 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 KCNK4Q9NYG8 393 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 TMEM216Q9P0N5 145 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 CPSF2Q9P2I0 782 aaKnown RBP13.32□□□□□ -0.28
CD44-224ENST00000526669 XPR1Q9UBH6 696 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 POLG2Q9UHN1 485 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 OARD1Q9Y530 152 aa13.32□□□□□ -0.28
CD44-224ENST00000526669 SPTBN4Q9H254 2564 aa13.31□□□□□ -0.28
CD44-224ENST00000526669 LILRA5A6NI73 299 aa13.31□□□□□ -0.28
CD44-224ENST00000526669 NUDT21O43809 227 aaKnown RBP13.31□□□□□ -0.28
CD44-224ENST00000526669 COL6A2P12110 1019 aa13.31□□□□□ -0.28
CD44-224ENST00000526669 PKLRP30613 574 aa13.31□□□□□ -0.28
CD44-224ENST00000526669 CCL7P80098 99 aa13.31□□□□□ -0.28
CD44-224ENST00000526669 FASTKQ14296 549 aaKnown RBP13.31□□□□□ -0.28
CD44-224ENST00000526669 ACAP2Q15057 778 aa13.31□□□□□ -0.28
CD44-224ENST00000526669 TNFAIP8L3Q5GJ75 292 aa13.31□□□□□ -0.28
CD44-224ENST00000526669 AGBL2Q5U5Z8 902 aa13.31□□□□□ -0.28
CD44-224ENST00000526669 GPSM1Q86YR5 675 aa13.31□□□□□ -0.28
CD44-224ENST00000526669 RBM12BQ8IXT5 1001 aaKnown RBP13.31□□□□□ -0.28
CD44-224ENST00000526669 BANPQ8N9N5 519 aa13.31□□□□□ -0.28
CD44-224ENST00000526669 AVL9Q8NBF6 648 aa13.31□□□□□ -0.28
CD44-224ENST00000526669 MAGEC3Q8TD91 643 aa13.31□□□□□ -0.28
CD44-224ENST00000526669 DENND1AQ8TEH3 1009 aa13.31□□□□□ -0.28
CD44-224ENST00000526669 RSC1A1Q92681 617 aa13.31□□□□□ -0.28
CD44-224ENST00000526669 SH3KBP1Q96B97 665 aa13.31□□□□□ -0.28
CD44-224ENST00000526669 ALKBH8Q96BT7 664 aaKnown RBP13.31□□□□□ -0.28
CD44-224ENST00000526669 ATOH8Q96SQ7 321 aa13.31□□□□□ -0.28
CD44-224ENST00000526669 TRIM54Q9BYV2 358 aa13.31□□□□□ -0.28
CD44-224ENST00000526669 EVA1BQ9NVM1 165 aa13.31□□□□□ -0.28
CD44-224ENST00000526669 ARL15Q9NXU5 204 aa13.31□□□□□ -0.28
CD44-224ENST00000526669 NCKIPSDQ9NZQ3 722 aa13.31□□□□□ -0.28
CD44-224ENST00000526669 CD274Q9NZQ7 290 aa13.31□□□□□ -0.28
CD44-224ENST00000526669 CDV3Q9UKY7 258 aaKnown RBP13.31□□□□□ -0.28
CD44-224ENST00000526669 EMCNQ9ULC0 261 aa13.31□□□□□ -0.28
CD44-224ENST00000526669 SPTBN2O15020 2390 aa13.31□□□□□ -0.28
CD44-224ENST00000526669 CFAP54Q96N23 3096 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 IGHV1OR21-1A0A087WYE8 117 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 OR6C74A6NCV1 312 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 MYO1CO00159 1063 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 BTN3A3O00478 584 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 GIPC1O14908 333 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 B4GAT1O43505 415 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 KERAO60938 352 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 UBXN7O94888 489 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 PROS1P07225 676 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 GSTA1P08263 222 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 ENO2P09104 434 aaPredicted RBP13.3□□□□□ -0.28
CD44-224ENST00000526669 HIST1H2AGP0C0S8 130 aaPredicted RBP13.3□□□□□ -0.28
CD44-224ENST00000526669 AMD1P17707 334 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 POLR2CP19387 275 aaPredicted RBP13.3□□□□□ -0.28
CD44-224ENST00000526669 HIST1H2ADP20671 130 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 KCNA4P22459 653 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 IMPA1P29218 277 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 ACADVLP49748 655 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 KPNA2P52292 529 aaKnown RBP13.3□□□□□ -0.28
CD44-224ENST00000526669 MAGOHP61326 146 aaKnown RBP13.3□□□□□ -0.28
CD44-224ENST00000526669 PPP1CAP62136 330 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 TGFBIQ15582 683 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 RSPO4Q2I0M5 234 aaPredicted RBP13.3□□□□□ -0.28
CD44-224ENST00000526669 ZNF438Q7Z4V0 828 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 SPRED1Q7Z699 444 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 CNPY4Q8N129 248 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 GOLGA6L1Q8N7Z2 621 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 FBXO15Q8NCQ5 510 aaPredicted RBP13.3□□□□□ -0.28
CD44-224ENST00000526669 OR6C4Q8NGE1 309 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 STAG3L4Q8TBR4 150 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 NAT6Q93015 286 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 TLCD1Q96CP7 247 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 AHCYL2Q96HN2 611 aaKnown RBP13.3□□□□□ -0.28
CD44-224ENST00000526669 HIST1H2AHQ96KK5 128 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 CDC6Q99741 560 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 HIST1H2AJQ99878 128 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 SH3GL2Q99962 352 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 H2AFJQ9BTM1 129 aa13.3□□□□□ -0.28
CD44-224ENST00000526669 MENTQ9BUN1 341 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms