RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 CLCNKAP51800 687 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 GTF2H3Q13889 308 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 C5orf22Q49AR2 442 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 CCDC58Q4VC31 144 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 KHDC1Q4VXA5 237 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 SLC9A4Q6AI14 798 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 ITPRIPL1Q6GPH6 555 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 C11orf63Q6NUN7 778 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 POMZP3Q6PJE2 187 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 SLC35F3Q8IY50 421 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 THAP11Q96EK4 314 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 HGH1Q9BTY7 390 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 CDADC1Q9BWV3 514 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 TBC1D10AQ9BXI6 508 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 SLC25A51Q9H1U9 297 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 CLK4Q9HAZ1 481 aaKnown RBP7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 THAP1Q9NVV9 213 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 SLC17A6Q9P2U8 582 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 SPASTQ9UBP0 616 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 RABGEF1Q9UJ41 708 aa7.73□□□□□ -1.17
LIMCH1-219ENST00000514096 CHD5Q8TDI0 1954 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 SPTY2D1-AS1A0A0U1RR47 76 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 PRSS38A1L453 326 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 SYNDIG1LA6NDD5 238 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 MEN1O00255 615 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 VILLO15195 856 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 VAPBO95292 243 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 NDST3O95803 873 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 MSH3P20585 1137 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 CA5AP35218 305 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 VHLP40337 213 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 EIF2S3P41091 472 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 RABIFP47224 123 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 CAPZA2P47755 286 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 HCAR3P49019 387 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 PPP2R2BQ00005 443 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 CDK3Q00526 305 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 CD300CQ08708 224 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 SPIDRQ14159 915 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 NFE2L1Q14494 772 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 SLC1A5Q15758 541 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 ST3GAL2Q16842 350 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 SPDYAQ5MJ70 313 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 PLA2G2CQ5R387 149 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 OR52E8Q6IFG1 317 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 KIAA1161Q6NSJ0 714 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 FAM180BQ6P0A1 224 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 CNSTQ6PJW8 725 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 B3GNT6Q6ZMB0 384 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 B3GNT8Q7Z7M8 397 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 METTL3Q86U44 580 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 KYQ8NBH2 561 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 IFI44Q8TCB0 444 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 EPS8L3Q8TE67 593 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 NCLNQ969V3 563 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 TBC1D20Q96BZ9 403 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 CHMP6Q96FZ7 201 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 LRIG1Q96JA1 1093 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 COX4I2Q96KJ9 171 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 MRGPRX2Q96LB1 330 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 ZNF641Q96N77 438 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 TBL1YQ9BQ87 522 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 HDAC8Q9BY41 377 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 FANCEQ9HB96 536 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 NMRK1Q9NWW6 199 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 TRPS1Q9UHF7 1281 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 RNF112Q9ULX5 631 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 APOBEC2Q9Y235 224 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 CFL2Q9Y281 166 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 KLHL20Q9Y2M5 609 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 GLYATL1P3A0A0U1RQE8 302 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 MIF4GDA9UHW6 222 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 PROB1E7EW31 1015 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 OR1I1O60431 355 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 KRT36O76013 467 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 RPLP0P05388 317 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 TGM2P21980 687 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 CTSCP53634 463 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 EIF3BP55884 814 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 NDUFA5Q16718 116 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 PERM1Q5SV97 790 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 ESRP1Q6NXG1 681 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 C16orf46Q6P387 395 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 DNAJB8Q8NHS0 232 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 MFSD3Q96ES6 412 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 ATP6V1G3Q96LB4 118 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 AIFM2Q9BRQ8 373 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 C1QTNF2Q9BXJ5 285 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 B3GNT4Q9C0J1 378 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 LIN28AQ9H9Z2 209 aaKnown RBP7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 RNPEPL1Q9HAU8 725 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 POU2F3Q9UKI9 436 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 ANGPTL2Q9UKU9 493 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 PADI4Q9UM07 663 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 RNF215Q9Y6U7 377 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 A0A1B0GTQ1 180 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 GSAPA4D1B5 854 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 TRAFD1O14545 582 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 HEXBP07686 556 aa7.72□□□□□ -1.17
LIMCH1-219ENST00000514096 JMJD7P0C870 316 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms