RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, human

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-215	ENST00000511843	KCND1	Q9NSA2	647 aa		12.85	□□□□□ -0.35
RNF4-215	ENST00000511843	TNRC6A	Q8NDV7	1962 aa	Known RBP	12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	ISM1	B1AKI9	464 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	DNALI1	O14645	258 aa	Predicted RBP	12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	S1PR4	O95977	384 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	ITGB2	P05107	769 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	FURIN	P09958	794 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	CCNYL3	P0C7X3	344 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	PAM	P19021	973 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	TCN2	P20062	427 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	OGN	P20774	298 aa	Known RBP	12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	GPS2	Q13227	327 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	CTBP1	Q13363	440 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	PTK6	Q13882	451 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	MSS51	Q4VC12	460 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	IZUMO3	Q5VZ72	239 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	PAPD7	Q5XG87	772 aa	Known RBP	12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	LCN10	Q6JVE6	187 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	CYB5D1	Q6P9G0	228 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	UNC5D	Q6UXZ4	953 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	TMEM135	Q86UB9	458 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	HOOK3	Q86VS8	718 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	CARF	Q8N187	725 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	C19orf47	Q8N9M1	422 aa	Known RBP	12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	GSDMB	Q8TAX9	411 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	WBP1	Q96G27	269 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	PWWP2A	Q96N64	755 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	SLC30A3	Q99726	388 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	MENT	Q9BUN1	341 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	LHX9	Q9NQ69	397 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	C20orf96	Q9NUD7	363 aa	Predicted RBP	12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	PADI1	Q9ULC6	663 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	COL6A6	A6NMZ7	2263 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	CFAP46	Q8IYW2	2715 aa		12.84	□□□□□ -0.35
RNF4-215	ENST00000511843	CTAGE9	A4FU28	777 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	CPNE3	O75131	537 aa	Known RBP	12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	CHRM3	P20309	590 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	CYP2A7	P20853	494 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	IVD	P26440	423 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	SLC1A2	P43004	574 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	MPP1	Q00013	466 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	DHX9	Q08211	1270 aa	Known RBP	12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	C19orf57	Q0VDD7	668 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	DNASE1L3	Q13609	305 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	CUL1	Q13616	776 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	THOC5	Q13769	683 aa	Known RBP	12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	ERV3-1	Q14264	604 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	KYNU	Q16719	465 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	LONRF1	Q17RB8	773 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	DEFB109B	Q30KR1	87 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	ACSBG2	Q5FVE4	666 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	RNF187	Q5TA31	235 aa	Predicted RBP	12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	FAM69B	Q5VUD6	431 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	ZNF549	Q6P9A3	640 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	DCUN1D3	Q8IWE4	304 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	MR1	Q95460	341 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	MED8	Q96G25	268 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	TCF12	Q99081	682 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	OR6C2	Q9NZP2	312 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	SLC17A6	Q9P2U8	582 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	PCYOX1	Q9UHG3	505 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	SAR1B	Q9Y6B6	198 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	MDC1	Q14676	2089 aa	Known RBP	12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	HEATR5B	Q9P2D3	2071 aa		12.83	□□□□□ -0.36
RNF4-215	ENST00000511843	SEC16A	O15027	2179 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843		A0A0J9YY10	115 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	TTI1	O43156	1089 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	USP1	O94782	785 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	C1orf105	O95561	183 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	ESR1	P03372	595 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	PKM	P14618	531 aa	Known RBP	12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	MAG	P20916	626 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	CD9	P21926	228 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	PSMB5	P28074	263 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	GABRA4	P48169	554 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	RAB28	P51157	221 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	MRPS25	P82663	173 aa	Known RBP	12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	NFKB2	Q00653	900 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	DR1	Q01658	176 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	NFATC3	Q12968	1075 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	PTCHD3	Q3KNS1	767 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	BBS9	Q3SYG4	887 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	PLEKHS1	Q5SXH7	462 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	BORA	Q6PGQ7	559 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	BPHL	Q86WA6	291 aa	Predicted RBP	12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	IGDCC3	Q8IVU1	814 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	ZBTB2	Q8N680	514 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	GIMAP7	Q8NHV1	300 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	SLCO2A1	Q92959	643 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	CLIP3	Q96DZ5	547 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	FCRL4	Q96PJ5	515 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	EFHD1	Q9BUP0	239 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	TRIM31	Q9BZY9	425 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	TWSG1	Q9GZX9	223 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	SPRTN	Q9H040	489 aa	Predicted RBP	12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	CHST8	Q9H2A9	424 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	ACTL8	Q9H568	366 aa		12.82	□□□□□ -0.36
RNF4-215	ENST00000511843	FANCE	Q9HB96	536 aa		12.82	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms