RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 ZSCAN5AQ9BUG6 496 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 SMPD3Q9NY59 655 aaPredicted RBP11.71□□□□□ -0.54
NUP54-202ENST00000502850 MARK1Q9P0L2 795 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 GMPR2Q9P2T1 348 aaKnown RBP11.71□□□□□ -0.54
NUP54-202ENST00000502850 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.71□□□□□ -0.54
NUP54-202ENST00000502850 PDE10AQ9Y233 779 aa11.71□□□□□ -0.54
NUP54-202ENST00000502850 A0A087WXM4 84 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 GRXCR1A8MXD5 290 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 FFAR3O14843 346 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 CCL16O15467 120 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 GPR42O15529 346 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 BNIP3LO60238 219 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 TPST1O60507 370 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 SCELO95171 688 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 HPRP00739 348 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 PGRP06401 933 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 ATP6V1B1P15313 513 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 HRH2P25021 359 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 HOXA9P31269 272 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 SLC6A12P48065 614 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 RPS14P62263 151 aaKnown RBP11.7□□□□□ -0.54
NUP54-202ENST00000502850 HTRA4P83105 476 aaPredicted RBP11.7□□□□□ -0.54
NUP54-202ENST00000502850 EPS8Q12929 822 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 SLC5A9Q2M3M2 681 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 DPY19L1Q2PZI1 675 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 FAM174BQ3ZCQ3 159 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 NADK2Q4G0N4 442 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 B3GNT6Q6ZMB0 384 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 OTOP2Q7RTS6 562 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 EPHX4Q8IUS5 362 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 RGL4Q8IZJ4 473 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 ADGRG2Q8IZP9 1017 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 TRAM1L1Q8N609 369 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 L3MBTL4Q8NA19 623 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 BPIFB1Q8TDL5 484 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 CSGALNACT1Q8TDX6 532 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 SKA2Q8WVK7 121 aaPredicted RBP11.7□□□□□ -0.54
NUP54-202ENST00000502850 ASZ1Q8WWH4 475 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 SELENOMQ8WWX9 145 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 ASB11Q8WXH4 323 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 MYLIPQ8WY64 445 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 STARD8Q92502 1023 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 CMTM7Q96FZ5 175 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 METTL2AQ96IZ6 378 aaKnown RBP11.7□□□□□ -0.54
NUP54-202ENST00000502850 SH3GL3Q99963 347 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 YTHDF1Q9BYJ9 559 aaKnown RBP11.7□□□□□ -0.54
NUP54-202ENST00000502850 GRIP2Q9C0E4 1043 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 FAM83DQ9H4H8 585 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 RPF2Q9H7B2 306 aaKnown RBP11.7□□□□□ -0.54
NUP54-202ENST00000502850 PIDD1Q9HB75 910 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 SPHK2Q9NRA0 654 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 TDP1Q9NUW8 608 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 DNAJC11Q9NVH1 559 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 ZNF639Q9UID6 485 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 OAZ3Q9UMX2 235 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 MAPRE3Q9UPY8 281 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 RNF11Q9Y3C5 154 aa11.7□□□□□ -0.54
NUP54-202ENST00000502850 A8MX80 341 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 UPK3BL1B0FP48 263 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 UPK3BL2E5RIL1 263 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 H0YAE9 185 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 PRMT3O60678 531 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 XYLBO75191 536 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 BMP10O95393 424 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 ASLP04424 464 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 TYRP14679 529 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 NCK1P16333 377 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 GJA1P17302 382 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 XPAP23025 273 aaPredicted RBP11.69□□□□□ -0.54
NUP54-202ENST00000502850 MAP4P27816 1152 aaKnown RBP11.69□□□□□ -0.54
NUP54-202ENST00000502850 CAPGP40121 348 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 GDF5P43026 501 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 RPS9P46781 194 aaKnown RBP11.69□□□□□ -0.54
NUP54-202ENST00000502850 CCR3P51677 355 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 CLDN8P56748 225 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 OR4D2P58180 307 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 B4GALNT1Q00973 533 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 CYP4F3Q08477 520 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 HSPA14Q0VDF9 509 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 CSTF3Q12996 717 aaKnown RBP11.69□□□□□ -0.54
NUP54-202ENST00000502850 PTGR1Q14914 329 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 ZNF284Q2VY69 593 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 SLC36A3Q495N2 470 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 USP39Q53GS9 565 aaKnown RBP11.69□□□□□ -0.54
NUP54-202ENST00000502850 LDLRAP1Q5SW96 308 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 ATG9BQ674R7 924 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 RBM44Q6ZP01 1051 aaKnown RBP11.69□□□□□ -0.54
NUP54-202ENST00000502850 Q6ZVU0 165 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 TMEM25Q86YD3 366 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 TMEM132CQ8N3T6 1108 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 DHRSXQ8N5I4 330 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 KIAA1958Q8N8K9 716 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 FAM47BQ8NA70 645 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 KLHL23Q8NBE8 558 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 DDHD1Q8NEL9 900 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 GTF2H4Q92759 462 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 TESCQ96BS2 214 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 ITCHQ96J02 903 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 HBEGFQ99075 208 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 TCF25Q9BQ70 676 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms