RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 TMEM179BQ7Z7N9 219 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 CDC26Q8NHZ8 85 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 BARD1Q99728 777 aaKnown RBP16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 DNMT3BQ9UBC3 853 aaKnown RBP16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 THRBP10828 461 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 ITGALP20701 1170 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 ACRV1P26436 265 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 SPIDRQ14159 915 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 CCNYL2Q5T2Q4 361 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 DLEU7Q6UYE1 221 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 Q6ZNB5 142 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 SNX20Q7Z614 316 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 RBFAQ8N0V3 343 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 HHIPL1Q96JK4 782 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 COX4I2Q96KJ9 171 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 ZNF558Q96NG5 402 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 BDH2Q9BUT1 245 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 MRPL17Q9NRX2 175 aaKnown RBP16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 SLC6A13Q9NSD5 602 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 ABCB8Q9NUT2 735 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 ADGRE2Q9UHX3 823 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 GNPTGQ9UJJ9 305 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 STOML2Q9UJZ1 356 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 GMEB1Q9Y692 573 aa16.16■□□□□ 0.18
CCDC88B-210ENST00000494566 PRKD3O94806 890 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 GPIP06744 558 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 MYCLP1P12525 358 aaPredicted RBP16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 AP1S1P61966 158 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 PCBP2Q15366 365 aaKnown RBP eCLIP16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 PGS1Q32NB8 556 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 FAM174BQ3ZCQ3 159 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 TPGS2Q68CL5 300 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 RETSATQ6NUM9 610 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 SLC39A11Q8N1S5 342 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 ZBTB2Q8N680 514 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 FAM162AQ96A26 154 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 PYCR2Q96C36 320 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 FAM126AQ9BYI3 521 aaPredicted RBP16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 LOC730098B7Z3J9 87 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 CFAP99D6REC4 459 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 G3V2T6 193 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 CXCL10P02778 98 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 FTH1P02794 183 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 IDUAP35475 653 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 CHRNB3Q05901 458 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 CPSF6Q16630 551 aaKnown RBP eCLIP16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 CDKN3Q16667 212 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 LRRC66Q68CR7 880 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 IGFN1Q86VF2 1251 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 TBC1D21Q8IYX1 336 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 UBE2FQ969M7 185 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 AMBRA1Q9C0C7 1298 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 OPTCQ9UBM4 332 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 DAPK2Q9UIK4 370 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 PTBP2Q9UKA9 531 aaKnown RBP16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 CCL26Q9Y258 94 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 SH3BP1Q9Y3L3 701 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 PCDHB1Q9Y5F3 818 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 MYO1GB0I1T2 1018 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 ADAM23O75077 832 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 RELAQ04206 551 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 KCNAB2Q13303 367 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 GTF2H3Q13889 308 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 ATP13A5Q4VNC0 1218 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 EFL1Q7Z2Z2 1120 aaKnown RBP16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 RNF175Q8N4F7 328 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 BORCS5Q969J3 196 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 FUNDC2Q9BWH2 189 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 RNF208Q9H0X6 261 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 ZIM2Q9NZV7 527 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 ATP11BQ9Y2G3 1177 aa16.15■□□□□ 0.18
CCDC88B-210ENST00000494566 OTCP00480 354 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 DCKP27707 260 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 RGS4P49798 205 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 NEK2P51955 445 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 IL5RAQ01344 420 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 ILF2Q12905 390 aaKnown RBP16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 RAB33AQ14088 237 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 SMN1Q16637 294 aaKnown RBP16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 XAF1Q6GPH4 301 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 CRTC3Q6UUV7 619 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 CRTC1Q6UUV9 634 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 ZDHHC13Q8IUH4 622 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 ASIC4Q96FT7 647 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 ALOXE3Q9BYJ1 711 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 RETREG1Q9H6L5 497 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 ZDHHC6Q9H6R6 413 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 FBXO10Q9UK96 956 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 COL4A6Q14031 1691 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 UPK1AO00322 258 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 ANKRD28O15084 1053 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 GMNNO75496 209 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 IMPDH2P12268 514 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 PFKLP17858 780 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 HTR1BP28222 390 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 CASP9P55211 416 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 VBP1P61758 197 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 ADARB1P78563 741 aaKnown RBP16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 EMX2Q04743 252 aa16.14■□□□□ 0.17
CCDC88B-210ENST00000494566 HSPA14Q0VDF9 509 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms