RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 OTCP00480 354 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 ZNF8P17098 575 aaPredicted RBP13.83□□□□□ -0.19
CUX1-209ENST00000487284 MAOBP27338 520 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 NUDT1P36639 197 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 PIK3CGP48736 1102 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 HNMTP50135 292 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 ERVPABLB-1P60509 514 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 TRAF3Q13114 568 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 DOK6Q6PKX4 331 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 XKR5Q6UX68 686 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 ARMCX6Q7L4S7 300 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 TRAPPC5Q8IUR0 188 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 ZNF547Q8IVP9 402 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 MCOLN3Q8TDD5 553 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 FOXJ1Q92949 421 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 CMTM5Q96DZ9 223 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 C3orf30Q96M34 536 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 NOL11Q9H8H0 719 aaKnown RBP13.83□□□□□ -0.19
CUX1-209ENST00000487284 KLC4Q9NSK0 619 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 FAM8A1Q9UBU6 413 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 TMEM98Q9Y2Y6 226 aa13.83□□□□□ -0.19
CUX1-209ENST00000487284 COPG1Q9Y678 874 aaKnown RBP13.83□□□□□ -0.19
CUX1-209ENST00000487284 CHUKO15111 745 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 CCNT2O60583 730 aaKnown RBP13.83□□□□□ -0.2
CUX1-209ENST00000487284 CRCPO75575 148 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 STK16O75716 305 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 HIST1H2AGP0C0S8 130 aaPredicted RBP13.83□□□□□ -0.2
CUX1-209ENST00000487284 MYCLP1P12525 358 aaPredicted RBP13.83□□□□□ -0.2
CUX1-209ENST00000487284 HIST1H2ADP20671 130 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 CD27P26842 260 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 PBLDP30039 288 aaPredicted RBP13.83□□□□□ -0.2
CUX1-209ENST00000487284 CPA2P48052 419 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 SLC6A12P48065 614 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 PREPP48147 710 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 MNAT1P51948 309 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 PFN3P60673 137 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 HERC3Q15034 1050 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 ANGPT1Q15389 498 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 XKR7Q5GH72 579 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 TPRG1LQ5T0D9 272 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 LETMD1Q6P1Q0 360 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 LRRC70Q7Z2Q7 622 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 ABI3BPQ7Z7G0 1075 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 LILRA3Q8N6C8 439 aaPredicted RBP13.83□□□□□ -0.2
CUX1-209ENST00000487284 HM13Q8TCT9 377 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 GAB3Q8WWW8 586 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 NELL1Q92832 810 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 HIST1H2AHQ96KK5 128 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 SLC6A18Q96N87 628 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 HIST1H2AJQ99878 128 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 H2AFJQ9BTM1 129 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 DUSP15Q9H1R2 295 aaPredicted RBP13.83□□□□□ -0.2
CUX1-209ENST00000487284 C1orf21Q9H246 121 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 IPPKQ9H8X2 491 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.83□□□□□ -0.2
CUX1-209ENST00000487284 HS3ST3A1Q9Y663 406 aa13.83□□□□□ -0.2
CUX1-209ENST00000487284 TNRC6BQ9UPQ9 1833 aaKnown RBP13.82□□□□□ -0.2
CUX1-209ENST00000487284 DMDP11532 3685 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 VPS13AQ96RL7 3174 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 PABPN1LA6NDY0 278 aaKnown RBP13.82□□□□□ -0.2
CUX1-209ENST00000487284 ARHGEF33A8MVX0 844 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 B2RBV5 119 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 CACNB4O00305 520 aaPredicted RBP13.82□□□□□ -0.2
CUX1-209ENST00000487284 GYG2O15488 501 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 VPS4BO75351 444 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 CHEK2O96017 543 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 CATP04040 527 aaKnown RBP13.82□□□□□ -0.2
CUX1-209ENST00000487284 COX4I1P13073 169 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 PIK3R1P27986 724 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 GDF5P43026 501 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 ELF3P78545 371 aaPredicted RBP13.82□□□□□ -0.2
CUX1-209ENST00000487284 ZXDCQ2QGD7 858 aaPredicted RBP13.82□□□□□ -0.2
CUX1-209ENST00000487284 C11orf96Q7Z7L8 435 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 DDIASQ8IXT1 998 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 POU5F2Q8N7G0 328 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 FBXO15Q8NCQ5 510 aaPredicted RBP13.82□□□□□ -0.2
CUX1-209ENST00000487284 RBM15BQ8NDT2 890 aaKnown RBP13.82□□□□□ -0.2
CUX1-209ENST00000487284 OR13H1Q8NG92 308 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 OR4F6Q8NGB9 312 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 OR2L2Q8NH16 312 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 FBXO27Q8NI29 283 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 FBXL8Q96CD0 374 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 CCT7Q99832 543 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 NTMT1Q9BV86 223 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 CADM1Q9BY67 442 aaKnown RBP13.82□□□□□ -0.2
CUX1-209ENST00000487284 SLC32A1Q9H598 525 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 PFDN4Q9NQP4 134 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 POLG2Q9UHN1 485 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 BTRCQ9Y297 605 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 TIMM22Q9Y584 194 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 ANGPTL3Q9Y5C1 460 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 PCYT1BQ9Y5K3 369 aaPredicted RBP13.82□□□□□ -0.2
CUX1-209ENST00000487284 PTGDR2Q9Y5Y4 395 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 PCM1Q15154 2024 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 LRP4O75096 1905 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 KNL1Q8NG31 2342 aa13.82□□□□□ -0.2
CUX1-209ENST00000487284 ATP6AP2A0A1C7CYW4 349 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 MGAT4DA6NG13 374 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 GPR89AB7ZAQ6 455 aa13.81□□□□□ -0.2
CUX1-209ENST00000487284 H3BM21 787 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms