RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	CD151	P48509	253 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	CSE1L	P55060	971 aa	Known RBP	10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	KLF1	Q13351	362 aa	Predicted RBP	10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	BOP1	Q14137	746 aa	Known RBP	10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	PTCHD3	Q3KNS1	767 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	CDHR3	Q6ZTQ4	885 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	SYVN1	Q86TM6	617 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	HOOK3	Q86VS8	718 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	GAS2L3	Q86XJ1	694 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	TMEM139	Q8IV31	216 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	ADGRF3	Q8IZF5	1079 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	DSEL	Q8IZU8	1212 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	SYCE1	Q8N0S2	351 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	DNAAF3	Q8N9W5	541 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	SPC24	Q8NBT2	197 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	FDCSP	Q8NFU4	85 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	OR5AR1	Q8NGP9	310 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	SLC35B2	Q8TB61	432 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	THAP4	Q8WY91	577 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	SNRNP40	Q96DI7	357 aa	Known RBP	10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	RANBP9	Q96S59	729 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	NUDT9	Q9BW91	350 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	TFB2M	Q9H5Q4	396 aa	Known RBP	10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	MVB12B	Q9H7P6	319 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	ACTR5	Q9H9F9	607 aa	Predicted RBP	10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	PCMTD2	Q9NV79	361 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	ASF1B	Q9NVP2	202 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	ACTR10	Q9NZ32	417 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	IMPACT	Q9P2X3	320 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	SLC2A6	Q9UGQ3	507 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	SERTAD3	Q9UJW9	196 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	PLAGL1	Q9UM63	463 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	SNX7	Q9UNH6	387 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	TDRKH	Q9Y2W6	561 aa	Known RBP	10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	HIVEP1	P15822	2718 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	PCSK5	Q92824	1860 aa		10.23	□□□□□ -0.77
HMGN1-215	ENST00000485550	ANKUB1	A6NFN9	424 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	C2orf74	A8MZ97	194 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	MATN2	O00339	956 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	PSMD3	O43242	534 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	ZNF749	O43361	778 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	HNRNPR	O43390	633 aa	Known RBP	10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	OR1I1	O60431	355 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	ETS1	P14921	441 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	VARS	P26640	1264 aa	Known RBP	10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	NSG1	P42857	185 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	GSDMD	P57764	484 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	RPA4	Q13156	261 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	SNX1	Q13596	522 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	RAPSN	Q13702	412 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	LAMB3	Q13751	1172 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	DEFB110	Q30KQ9	67 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	P3H1	Q32P28	736 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	ZNF789	Q5FWF6	425 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	IZUMO3	Q5VZ72	239 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	PPP1R21	Q6ZMI0	780 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	ZNF517	Q6ZMY9	492 aa	Predicted RBP	10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	UNC5A	Q6ZN44	842 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	SYTL1	Q8IYJ3	562 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	SLC34A3	Q8N130	599 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	CARF	Q8N187	725 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	CISD2	Q8N5K1	135 aa	Known RBP	10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	LMNTD1	Q8N9Z9	388 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	SEC14L1	Q92503	715 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	N4BP2L2	Q92802	583 aa	Predicted RBP	10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	HDAC10	Q969S8	669 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	PNPLA2	Q96AD5	504 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	C19orf43	Q9BQ61	176 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	ETNK1	Q9HBU6	452 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	FAM60A	Q9NP50	221 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	LATS2	Q9NRM7	1088 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	TCFL5	Q9UL49	500 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	ICK	Q9UPZ9	632 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	ASF1A	Q9Y294	204 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	CAPN6	Q9Y6Q1	641 aa		10.22	□□□□□ -0.77
HMGN1-215	ENST00000485550	CSMD2	Q7Z408	3487 aa		10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550	MROH6	A6NGR9	719 aa		10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550		E7EQ34	232 aa		10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550	LIN7A	O14910	233 aa	Predicted RBP	10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550	HCRTR1	O43613	425 aa		10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550	ZNF189	O75820	626 aa	Predicted RBP	10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550	AP2A2	O94973	939 aa		10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550	GOT2	P00505	430 aa	Known RBP	10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550	CAPN1	P07384	714 aa		10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550	CTSB	P07858	339 aa		10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550	RAB40AL	P0C0E4	278 aa		10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550	TPBGL	P0DKB5	382 aa		10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550	CBSL	P0DN79	551 aa		10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550	UGT2B7	P16662	529 aa		10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550	FOXN2	P32314	431 aa		10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550	RORA	P35398	523 aa		10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550	CBS	P35520	551 aa		10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550	ITGA1	P56199	1179 aa		10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550	CDH17	Q12864	832 aa		10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550	ELOA	Q14241	798 aa	Known RBP	10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550	ITIH4	Q14624	930 aa		10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550	ZIC1	Q15915	447 aa		10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550	PLEKHN1	Q494U1	663 aa	Predicted RBP	10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550	SYTL3	Q4VX76	610 aa		10.21	□□□□□ -0.77
HMGN1-215	ENST00000485550	C1orf189	Q5VU69	101 aa		10.21	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms