RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 SPG21Q9NZD8 308 aa4.31□□□□□ -1.72
VPS13A-211ENST00000484581 KLHL9Q9P2J3 617 aa4.31□□□□□ -1.72
VPS13A-211ENST00000484581 HOOK1Q9UJC3 728 aaKnown RBP4.31□□□□□ -1.72
VPS13A-211ENST00000484581 FZD10Q9ULW2 581 aa4.31□□□□□ -1.72
VPS13A-211ENST00000484581 AMDHD2Q9Y303 409 aa4.31□□□□□ -1.72
VPS13A-211ENST00000484581 YIPF1Q9Y548 306 aa4.31□□□□□ -1.72
VPS13A-211ENST00000484581 PCDHAC2Q9Y5I4 1007 aa4.31□□□□□ -1.72
VPS13A-211ENST00000484581 HS3ST3B1Q9Y662 390 aa4.31□□□□□ -1.72
VPS13A-211ENST00000484581 IGLV5-39A0A0G2JS06 123 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 A0A0U1RQJ8 604 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 A0A1W2PPW3 197 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 ELOVL7A1L3X0 281 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 HYKKA2RU49 373 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 OR5K3A6NET4 321 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 SLC9B1P1A6NJY1 282 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 C15orf62A8K5M9 175 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 BECN2A8MW95 431 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 ANKRD66B4E2M5 251 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 TMEM178BH3BS89 294 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 GLCEO94923 617 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 SYF2O95926 243 aaKnown RBP4.3□□□□□ -1.72
VPS13A-211ENST00000484581 PLGP00747 810 aaPredicted RBP4.3□□□□□ -1.72
VPS13A-211ENST00000484581 IGHV4-30-4P0DP06 118 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 LBPP18428 481 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 S1PR1P21453 382 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 SLC6A6P31641 620 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 HPDP32754 393 aaPredicted RBP4.3□□□□□ -1.72
VPS13A-211ENST00000484581 PTGER4P35408 488 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 LUMP51884 338 aaPredicted RBP4.3□□□□□ -1.72
VPS13A-211ENST00000484581 TPD52P55327 224 aaPredicted RBP4.3□□□□□ -1.72
VPS13A-211ENST00000484581 MTCP1P56278 107 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 COG7P83436 770 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 MAT1AQ00266 395 aaKnown RBP4.3□□□□□ -1.72
VPS13A-211ENST00000484581 PDE1BQ01064 536 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 GPS2Q13227 327 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 RBMS2Q15434 407 aaKnown RBP4.3□□□□□ -1.72
VPS13A-211ENST00000484581 NPTX1Q15818 432 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 SGCBQ16585 318 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 ODF3L2Q3SX64 289 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 FNBP1LQ5T0N5 605 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 AWAT2Q6E213 333 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 FAM122CQ6P4D5 195 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 LINGO4Q6UY18 593 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 TECPR1Q7Z6L1 1165 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 PIGWQ7Z7B1 504 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 CCDC83Q8IWF9 413 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 HSCBQ8IWL3 235 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 LMNTD2Q8IXW0 634 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 RYBPQ8N488 228 aaPredicted RBP4.3□□□□□ -1.72
VPS13A-211ENST00000484581 AMER3Q8N944 861 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 MRPL43Q8N983 215 aaKnown RBP4.3□□□□□ -1.72
VPS13A-211ENST00000484581 OR5M8Q8NGP6 311 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 VANGL1Q8TAA9 524 aaPredicted RBP4.3□□□□□ -1.72
VPS13A-211ENST00000484581 SLC13A3Q8WWT9 602 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 PIGTQ969N2 578 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 DHX58Q96C10 678 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 STAMBPL1Q96FJ0 436 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 MYADMQ96S97 322 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 RUFY1Q96T51 708 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 PCYT2Q99447 389 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 OSBPL8Q9BZF1 889 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 ABCG4Q9H172 646 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 ZBTB40Q9NUA8 1239 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 DNAJC11Q9NVH1 559 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 INTS10Q9NVR2 710 aaKnown RBP4.3□□□□□ -1.72
VPS13A-211ENST00000484581 MIOSQ9NXC5 875 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 HMG20BQ9P0W2 317 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 TMCC3Q9ULS5 477 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 GPR132Q9UNW8 380 aa4.3□□□□□ -1.72
VPS13A-211ENST00000484581 SPIN1Q9Y657 262 aaPredicted RBP4.3□□□□□ -1.72
VPS13A-211ENST00000484581 A0A0A6YYC8 382 aaPredicted RBP4.29□□□□□ -1.72
VPS13A-211ENST00000484581 A0A1W2PPK0 400 aa4.29□□□□□ -1.72
VPS13A-211ENST00000484581 RPS10-NUDT3A0A1W2PQS6 291 aa4.29□□□□□ -1.72
VPS13A-211ENST00000484581 MED19A0JLT2 244 aaPredicted RBP4.29□□□□□ -1.72
VPS13A-211ENST00000484581 SYCE3A1L190 88 aa4.29□□□□□ -1.72
VPS13A-211ENST00000484581 I3L1I5 382 aaPredicted RBP4.29□□□□□ -1.72
VPS13A-211ENST00000484581 FLRT2O43155 660 aa4.29□□□□□ -1.72
VPS13A-211ENST00000484581 TXNL1O43396 289 aa4.29□□□□□ -1.72
VPS13A-211ENST00000484581 WISP2O76076 250 aa4.29□□□□□ -1.72
VPS13A-211ENST00000484581 NTN1O95631 604 aa4.29□□□□□ -1.72
VPS13A-211ENST00000484581 WDPCPO95876 746 aa4.29□□□□□ -1.72
VPS13A-211ENST00000484581 SNHG28P0DPA3 235 aa4.29□□□□□ -1.72
VPS13A-211ENST00000484581 HAPLN1P10915 354 aaPredicted RBP4.29□□□□□ -1.72
VPS13A-211ENST00000484581 TNFRSF1BP20333 461 aa4.29□□□□□ -1.72
VPS13A-211ENST00000484581 CORO1AP31146 461 aaKnown RBP4.29□□□□□ -1.72
VPS13A-211ENST00000484581 KIF5BP33176 963 aa4.29□□□□□ -1.72
VPS13A-211ENST00000484581 IER3P46695 156 aa4.29□□□□□ -1.72
VPS13A-211ENST00000484581 RFX2P48378 723 aa4.29□□□□□ -1.72
VPS13A-211ENST00000484581 CASP9P55211 416 aa4.29□□□□□ -1.72
VPS13A-211ENST00000484581 ROR2Q01974 943 aaKnown RBP4.29□□□□□ -1.72
VPS13A-211ENST00000484581 FOLH1Q04609 750 aa4.29□□□□□ -1.72
VPS13A-211ENST00000484581 RUNX1T1Q06455 604 aa4.29□□□□□ -1.72
VPS13A-211ENST00000484581 SYT14P1Q58G82 188 aa4.29□□□□□ -1.72
VPS13A-211ENST00000484581 KLC3Q6P597 504 aa4.29□□□□□ -1.72
VPS13A-211ENST00000484581 CYB5D1Q6P9G0 228 aa4.29□□□□□ -1.72
VPS13A-211ENST00000484581 PODNL1Q6PEZ8 512 aa4.29□□□□□ -1.72
VPS13A-211ENST00000484581 SHC4Q6S5L8 630 aa4.29□□□□□ -1.72
VPS13A-211ENST00000484581 BTN2A1Q7KYR7 527 aa4.29□□□□□ -1.72
VPS13A-211ENST00000484581 FAM114A1Q8IWE2 563 aa4.29□□□□□ -1.72
VPS13A-211ENST00000484581 ZNF34Q8IZ26 560 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms