RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 KRT87PA6NCN2 255 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 TBC1D3FA6NER0 549 aaPredicted RBP13.67□□□□□ -0.22
CLK3-204ENST00000483723 TBC1D3LB9A6J9 549 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 SLC28A1O00337 649 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 MANBAO00462 879 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 MAN2B1O00754 1011 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 UGDHO60701 494 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 PEX11AO75192 247 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 ATP6V1G2O95670 118 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 FUCA1P04066 466 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 TBC1D3HP0C7X1 549 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 IDO1P14902 403 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 NDUFV2P19404 249 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 IMPA1P29218 277 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 IGFALSP35858 605 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 BDKRB1P46663 353 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 ERVK-8P63133 956 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 EMX2Q04743 252 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 STX5Q13190 355 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 E2F2Q14209 437 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 TBC1D3GQ6DHY5 549 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 TBC1D3CQ6IPX1 549 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 UNC5DQ6UXZ4 953 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 TBC1D3Q8IZP1 549 aaPredicted RBP13.67□□□□□ -0.22
CLK3-204ENST00000483723 ZNF687Q8N1G0 1237 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 KYQ8NBH2 561 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 HLA-CQ95604 372 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 PYCR2Q96C36 320 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 SCARF2Q96GP6 870 aaPredicted RBP13.67□□□□□ -0.22
CLK3-204ENST00000483723 THTPAQ9BU02 230 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 BRINP2Q9C0B6 783 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 DENND2DQ9H6A0 471 aaPredicted RBP13.67□□□□□ -0.22
CLK3-204ENST00000483723 ITM2CQ9NQX7 267 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 SLC17A4Q9Y2C5 497 aa13.67□□□□□ -0.22
CLK3-204ENST00000483723 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.67□□□□□ -0.22
CLK3-204ENST00000483723 NPIPB8E9PQR5 432 aa13.66□□□□□ -0.22
CLK3-204ENST00000483723 AIM2O14862 343 aa13.66□□□□□ -0.22
CLK3-204ENST00000483723 LSM1O15116 133 aaKnown RBP13.66□□□□□ -0.22
CLK3-204ENST00000483723 KCNJ13O60928 360 aa13.66□□□□□ -0.22
CLK3-204ENST00000483723 ULK1O75385 1050 aa13.66□□□□□ -0.22
CLK3-204ENST00000483723 SNRPB2P08579 225 aaKnown RBP13.66□□□□□ -0.22
CLK3-204ENST00000483723 GABRG2P18507 467 aa13.66□□□□□ -0.22
CLK3-204ENST00000483723 STX1BP61266 288 aa13.66□□□□□ -0.22
CLK3-204ENST00000483723 LIPJQ5W064 366 aa13.66□□□□□ -0.22
CLK3-204ENST00000483723 DOK6Q6PKX4 331 aa13.66□□□□□ -0.22
CLK3-204ENST00000483723 PAOXQ6QHF9 649 aa13.66□□□□□ -0.22
CLK3-204ENST00000483723 GK5Q6ZS86 529 aa13.66□□□□□ -0.22
CLK3-204ENST00000483723 Q7L0L9 218 aa13.66□□□□□ -0.22
CLK3-204ENST00000483723 THOC6Q86W42 341 aaKnown RBP13.66□□□□□ -0.22
CLK3-204ENST00000483723 TRIM69Q86WT6 500 aa13.66□□□□□ -0.22
CLK3-204ENST00000483723 ULK2Q8IYT8 1036 aa13.66□□□□□ -0.22
CLK3-204ENST00000483723 DSELQ8IZU8 1212 aa13.66□□□□□ -0.22
CLK3-204ENST00000483723 MIER2Q8N344 545 aa13.66□□□□□ -0.22
CLK3-204ENST00000483723 SNX31Q8N9S9 440 aa13.66□□□□□ -0.22
CLK3-204ENST00000483723 OR9A1PQ8NGU1 263 aa13.66□□□□□ -0.22
CLK3-204ENST00000483723 TSPEARQ8WU66 669 aa13.66□□□□□ -0.22
CLK3-204ENST00000483723 RCN3Q96D15 328 aa13.66□□□□□ -0.22
CLK3-204ENST00000483723 CDX2Q99626 313 aaPredicted RBP13.66□□□□□ -0.22
CLK3-204ENST00000483723 APOOQ9BUR5 198 aa13.66□□□□□ -0.22
CLK3-204ENST00000483723 ACTR8Q9H981 624 aa13.66□□□□□ -0.22
CLK3-204ENST00000483723 SLC52A3Q9NQ40 469 aa13.66□□□□□ -0.22
CLK3-204ENST00000483723 OR1A2Q9Y585 309 aa13.66□□□□□ -0.22
CLK3-204ENST00000483723 NUMA1Q14980 2115 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 PRR19A6NJB7 356 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 FBP2O00757 339 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 SLC16A8O95907 504 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 KRT6AP02538 564 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 KRT6BP04259 564 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 CEACAM5P06731 702 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 CHRNB1P11230 501 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 ACADMP11310 421 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 HNRNPH1P31943 449 aaKnown RBP13.65□□□□□ -0.22
CLK3-204ENST00000483723 ARL1P40616 181 aaPredicted RBP13.65□□□□□ -0.22
CLK3-204ENST00000483723 CASP2P42575 452 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 KRT6CP48668 564 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 TPMTP51580 245 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 DIO3P55073 304 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 PPP2CBP62714 309 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 PPP2CAP67775 309 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 ZNF33BQ06732 778 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 NAE1Q13564 534 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 LRP8Q14114 963 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 SKIV2LQ15477 1246 aaKnown RBP13.65□□□□□ -0.22
CLK3-204ENST00000483723 MLF2Q15773 248 aaPredicted RBP13.65□□□□□ -0.22
CLK3-204ENST00000483723 PDCD4Q53EL6 469 aaKnown RBP13.65□□□□□ -0.22
CLK3-204ENST00000483723 PDZD3Q86UT5 571 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 PACS2Q86VP3 889 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 LRRC56Q8IYG6 542 aaPredicted RBP13.65□□□□□ -0.22
CLK3-204ENST00000483723 DEFB107AQ8IZN7 70 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 DENND6BQ8NEG7 585 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 ZNF480Q8WV37 535 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 PPP3R2Q96LZ3 170 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 OR4K3Q96R72 315 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 SLC25A23Q9BV35 468 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 NDE1Q9NXR1 346 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 CCDC167Q9P0B6 97 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 KLQ9UEF7 1012 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 PRKAB1Q9Y478 270 aa13.65□□□□□ -0.22
CLK3-204ENST00000483723 PRR23AA6NEV1 266 aa13.64□□□□□ -0.23
CLK3-204ENST00000483723 CHURC1-FNTBB4DL54 471 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms