RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 LMLNQ96KR4 655 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 SEZ6LQ9BYH1 1024 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 ZDHHC3Q9NYG2 299 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 RSL24D1Q9UHA3 163 aaKnown RBP18.64■□□□□ 0.57
VIM-203ENST00000469543 PCDHGA11Q9Y5H2 935 aa18.64■□□□□ 0.57
VIM-203ENST00000469543 CLGNO14967 610 aa18.63■□□□□ 0.57
VIM-203ENST00000469543 PRKD3O94806 890 aa18.63■□□□□ 0.57
VIM-203ENST00000469543 EBLN1P0CF75 366 aa18.63■□□□□ 0.57
VIM-203ENST00000469543 MAP7Q14244 749 aa18.63■□□□□ 0.57
VIM-203ENST00000469543 PGS1Q32NB8 556 aa18.63■□□□□ 0.57
VIM-203ENST00000469543 PACRGLQ8N7B6 248 aa18.63■□□□□ 0.57
VIM-203ENST00000469543 EBPLQ9BY08 206 aa18.63■□□□□ 0.57
VIM-203ENST00000469543 TBX21Q9UL17 535 aa18.63■□□□□ 0.57
VIM-203ENST00000469543 PADI4Q9UM07 663 aa18.63■□□□□ 0.57
VIM-203ENST00000469543 VCANP13611 3396 aa18.63■□□□□ 0.57
VIM-203ENST00000469543 HIDE1A8MVS5 230 aa18.63■□□□□ 0.57
VIM-203ENST00000469543 GSTA4O15217 222 aa18.63■□□□□ 0.57
VIM-203ENST00000469543 ANXA6P08133 673 aa18.63■□□□□ 0.57
VIM-203ENST00000469543 POLR2IP36954 125 aaKnown RBP18.63■□□□□ 0.57
VIM-203ENST00000469543 SLC7A9P82251 487 aa18.63■□□□□ 0.57
VIM-203ENST00000469543 PMS2P3Q13401 168 aa18.63■□□□□ 0.57
VIM-203ENST00000469543 RBBP5Q15291 538 aaKnown RBP18.63■□□□□ 0.57
VIM-203ENST00000469543 CLVS1Q8IUQ0 354 aaPredicted RBP18.63■□□□□ 0.57
VIM-203ENST00000469543 CLEC4FQ8N1N0 589 aa18.63■□□□□ 0.57
VIM-203ENST00000469543 ZNF548Q8NEK5 533 aaPredicted RBP18.63■□□□□ 0.57
VIM-203ENST00000469543 NETO1Q8TDF5 533 aa18.63■□□□□ 0.57
VIM-203ENST00000469543 USP7Q93009 1102 aa18.63■□□□□ 0.57
VIM-203ENST00000469543 ECHDC3Q96DC8 303 aa18.63■□□□□ 0.57
VIM-203ENST00000469543 BDH2Q9BUT1 245 aa18.63■□□□□ 0.57
VIM-203ENST00000469543 INVSQ9Y283 1065 aa18.63■□□□□ 0.57
VIM-203ENST00000469543 TRAV19A0A0A6YYK7 116 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 CXCL14O95715 111 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 NPPAP01160 153 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 UMPSP11172 480 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 CDH1P12830 882 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 ETV3P41162 512 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 WDR5P61964 334 aaKnown RBP18.62■□□□□ 0.57
VIM-203ENST00000469543 CBX2Q14781 532 aaPredicted RBP18.62■□□□□ 0.57
VIM-203ENST00000469543 LAPTM4AQ15012 233 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 USP45Q70EL2 814 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 ZNF551Q7Z340 670 aaPredicted RBP18.62■□□□□ 0.57
VIM-203ENST00000469543 HSD11B1LQ7Z5J1 315 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 DCUN1D5Q9BTE7 237 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 SLC32A1Q9H598 525 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 CLMPQ9H6B4 373 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 PARVBQ9HBI1 364 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 C1orf109Q9NX04 203 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 GPRC5BQ9NZH0 403 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 MAGEL2Q9UJ55 1249 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 PPT2Q9UMR5 302 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 ERVK-11Q9UQG0 969 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 FCGR1AP12314 374 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 CAPGP40121 348 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 SPINT3P49223 89 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 ARSFP54793 590 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 CACHD1Q5VU97 1274 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 ZBTB46Q86UZ6 589 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 CBARPQ8N350 705 aaPredicted RBP18.62■□□□□ 0.57
VIM-203ENST00000469543 GOLM1Q8NBJ4 401 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 ITCHQ96J02 903 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 APOLD1Q96LR9 279 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 NAA50Q9GZZ1 169 aaKnown RBP18.62■□□□□ 0.57
VIM-203ENST00000469543 KCTD5Q9NXV2 234 aa18.62■□□□□ 0.57
VIM-203ENST00000469543 AOAHP28039 575 aa18.61■□□□□ 0.57
VIM-203ENST00000469543 TTLL9Q3SXZ7 439 aa18.61■□□□□ 0.57
VIM-203ENST00000469543 CCSMST1Q4G0I0 132 aa18.61■□□□□ 0.57
VIM-203ENST00000469543 TMEM179BQ7Z7N9 219 aa18.61■□□□□ 0.57
VIM-203ENST00000469543 CPXM2Q8N436 756 aa18.61■□□□□ 0.57
VIM-203ENST00000469543 OR2A12Q8NGT7 310 aa18.61■□□□□ 0.57
VIM-203ENST00000469543 LYSMD1Q96S90 227 aa18.61■□□□□ 0.57
VIM-203ENST00000469543 ZBTB18Q99592 522 aa18.61■□□□□ 0.57
VIM-203ENST00000469543 ELOVL6Q9H5J4 265 aa18.61■□□□□ 0.57
VIM-203ENST00000469543 SERHLQ9NQF3 203 aa18.61■□□□□ 0.57
VIM-203ENST00000469543 HS3ST2Q9Y278 367 aa18.61■□□□□ 0.57
VIM-203ENST00000469543 SLC28A1O00337 649 aa18.61■□□□□ 0.57
VIM-203ENST00000469543 IFRD1O00458 451 aaPredicted RBP18.61■□□□□ 0.57
VIM-203ENST00000469543 SHMT2P34897 504 aa18.61■□□□□ 0.57
VIM-203ENST00000469543 CSNK1DP48730 415 aa18.61■□□□□ 0.57
VIM-203ENST00000469543 ERVFC1P60507 584 aa18.61■□□□□ 0.57
VIM-203ENST00000469543 CHRNB3Q05901 458 aa18.61■□□□□ 0.57
VIM-203ENST00000469543 DDX39BQ13838 428 aaKnown RBP18.61■□□□□ 0.57
VIM-203ENST00000469543 NEDD8Q15843 81 aa18.61■□□□□ 0.57
VIM-203ENST00000469543 AP1ARQ63HQ0 302 aa18.61■□□□□ 0.57
VIM-203ENST00000469543 ANKRD26P1Q6NSI1 321 aa18.61■□□□□ 0.57
VIM-203ENST00000469543 KLHL23Q8NBE8 558 aa18.61■□□□□ 0.57
VIM-203ENST00000469543 ASB11Q8WXH4 323 aa18.61■□□□□ 0.57
VIM-203ENST00000469543 NCLNQ969V3 563 aa18.61■□□□□ 0.57
VIM-203ENST00000469543 MTERF1Q99551 399 aaKnown RBP18.61■□□□□ 0.57
VIM-203ENST00000469543 EXD2Q9NVH0 621 aa18.61■□□□□ 0.57
VIM-203ENST00000469543 PLXNB3Q9ULL4 1909 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 TTC34A8MYJ7 566 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 CST1P01037 141 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 RAP2AP10114 183 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 NTHL1P78549 312 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 ABRQ12979 859 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 FAM98BQ52LJ0 330 aaKnown RBP18.6■□□□□ 0.57
VIM-203ENST00000469543 CARD16Q5EG05 197 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 MPP7Q5T2T1 576 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 SPRED2Q7Z698 418 aa18.6■□□□□ 0.57
VIM-203ENST00000469543 KREMEN2Q8NCW0 462 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms