RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 SHMT2P34897 504 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 DEKP35659 375 aaKnown RBP11.29□□□□□ -0.6
CUX1-207ENST00000465461 GMPRP36959 345 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 TAS2R39P59534 338 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 EIF3IQ13347 325 aaKnown RBP11.29□□□□□ -0.6
CUX1-207ENST00000465461 PDAP1Q13442 181 aaKnown RBP11.29□□□□□ -0.6
CUX1-207ENST00000465461 ST3GAL2Q16842 350 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 FAM153CQ494X1 144 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 FAM45BPQ6NSW5 357 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 UGT3A1Q6NUS8 523 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 PRSS42Q7Z5A4 293 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 SLC26A11Q86WA9 606 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 ZFAND4Q86XD8 727 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 PROSER1Q86XN7 944 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 CEP97Q8IW35 865 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 IFT20Q8IY31 132 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 LSMEM2Q8N112 164 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 BMPERQ8N8U9 685 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 KDF1Q8NAX2 398 aaPredicted RBP11.29□□□□□ -0.6
CUX1-207ENST00000465461 FLVCR1-AS1Q8TAF5 88 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 FAM45AQ8TCE6 357 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 DENND1AQ8TEH3 1009 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 CDKL2Q92772 493 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 DLG3Q92796 817 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 LINGO1Q96FE5 620 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 VPS39Q96JC1 886 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 FOPNLQ96NB1 174 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 OR2A14Q96R47 310 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 PKP4Q99569 1192 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 MCMBPQ9BTE3 642 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 UNKQ9C0B0 810 aaKnown RBP11.29□□□□□ -0.6
CUX1-207ENST00000465461 ZNF768Q9H5H4 540 aaKnown RBP11.29□□□□□ -0.6
CUX1-207ENST00000465461 WDR70Q9NW82 654 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 IKZF3Q9UKT9 509 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 POMT2Q9UKY4 750 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 SLC39A10Q9ULF5 831 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 KLHL20Q9Y2M5 609 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 B3GALT1Q9Y5Z6 326 aa11.29□□□□□ -0.6
CUX1-207ENST00000465461 C2orf74A8MZ97 194 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 RASGRF2O14827 1237 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 DXOO77932 396 aaKnown RBP11.28□□□□□ -0.6
CUX1-207ENST00000465461 RPN2P04844 631 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 ITGA2BP08514 1039 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 ANKRD34CP0C6C1 535 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 EBLN1P0CF75 366 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 FOLR1P15328 257 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 ST6GAL1P15907 406 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 CD9P21926 228 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 PSMB5P28074 263 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 STX2P32856 288 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 RAB28P51157 221 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 YBX1P67809 324 aaKnown RBP11.28□□□□□ -0.6
CUX1-207ENST00000465461 MC2RQ01718 297 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 TTC23LQ6PF05 361 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 CYS1Q717R9 158 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 SPATA6LQ8N4H0 392 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 PPFIBP2Q8ND30 876 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 ASB11Q8WXH4 323 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 KLHL6Q8WZ60 621 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 RAD51AP1Q96B01 352 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 ZNF578Q96N58 590 aaPredicted RBP11.28□□□□□ -0.6
CUX1-207ENST00000465461 OR6C1Q96RD1 312 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 TAAR9Q96RI9 348 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 RBBP8Q99708 897 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 RHOJQ9H4E5 214 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 ABCF3Q9NUQ8 709 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 SIDT1Q9NXL6 827 aaKnown RBP11.28□□□□□ -0.6
CUX1-207ENST00000465461 KLHL42Q9P2K6 505 aa11.28□□□□□ -0.6
CUX1-207ENST00000465461 ADAMTS20P59510 1910 aa11.27□□□□□ -0.6
CUX1-207ENST00000465461 TLCD2A6NGC4 264 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 PHGDHO43175 533 aaKnown RBP11.27□□□□□ -0.61
CUX1-207ENST00000465461 TSPAN12O95859 305 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 CBSLP0DN79 551 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 MYBL2P10244 700 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 NELFEP18615 380 aaKnown RBP11.27□□□□□ -0.61
CUX1-207ENST00000465461 CBSP35520 551 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 GP5P40197 560 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 EIF2S3P41091 472 aaKnown RBP11.27□□□□□ -0.61
CUX1-207ENST00000465461 SKIV2L2P42285 1042 aaKnown RBP11.27□□□□□ -0.61
CUX1-207ENST00000465461 ARL4DP49703 201 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 TSTA3Q13630 321 aaPredicted RBP11.27□□□□□ -0.61
CUX1-207ENST00000465461 TGIF1Q15583 401 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 GPR19Q15760 415 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 ZIC1Q15915 447 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 UAP1Q16222 522 aaPredicted RBP11.27□□□□□ -0.61
CUX1-207ENST00000465461 SPESP1Q6UW49 350 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 SUSD1Q6UWL2 747 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 MBOAT1Q6ZNC8 495 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 NEK10Q6ZWH5 1172 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 UBE2R2Q712K3 238 aaPredicted RBP11.27□□□□□ -0.61
CUX1-207ENST00000465461 MYO1HQ8N1T3 1032 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 OR9A1PQ8NGU1 263 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 OR2L8Q8NGY9 312 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 ANKRD49Q8WVL7 239 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 UBXN4Q92575 508 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 FGF11Q92914 225 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 SLC41A2Q96JW4 573 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 TRAPPC9Q96Q05 1148 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 CPNE1Q99829 537 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 THSD1Q9NS62 852 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms