RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 ZNHIT2Q9UHR6 403 aa10.44□□□□□ -0.74
CUX1-205ENST00000425244 STOML2Q9UJZ1 356 aa10.44□□□□□ -0.74
CUX1-205ENST00000425244 DNAH14Q0VDD8 3507 aa10.44□□□□□ -0.74
CUX1-205ENST00000425244 hCG_2014768A0A024R1R8 64 aa10.44□□□□□ -0.74
CUX1-205ENST00000425244 TMEM221A6NGB7 291 aa10.44□□□□□ -0.74
CUX1-205ENST00000425244 IGFBP4P22692 258 aa10.44□□□□□ -0.74
CUX1-205ENST00000425244 VARSP26640 1264 aaKnown RBP10.44□□□□□ -0.74
CUX1-205ENST00000425244 HTR1EP28566 365 aa10.44□□□□□ -0.74
CUX1-205ENST00000425244 HNF1BP35680 557 aa10.44□□□□□ -0.74
CUX1-205ENST00000425244 CAPGP40121 348 aa10.44□□□□□ -0.74
CUX1-205ENST00000425244 TUBA4AP68366 448 aa10.44□□□□□ -0.74
CUX1-205ENST00000425244 DLX2Q07687 328 aaPredicted RBP10.44□□□□□ -0.74
CUX1-205ENST00000425244 ARHGEF7Q14155 803 aa10.44□□□□□ -0.74
CUX1-205ENST00000425244 FAM174BQ3ZCQ3 159 aa10.44□□□□□ -0.74
CUX1-205ENST00000425244 KCTD21Q4G0X4 260 aa10.44□□□□□ -0.74
CUX1-205ENST00000425244 MPPE1Q53F39 396 aa10.44□□□□□ -0.74
CUX1-205ENST00000425244 CHST15Q7LFX5 561 aaPredicted RBP10.44□□□□□ -0.74
CUX1-205ENST00000425244 SNX20Q7Z614 316 aa10.44□□□□□ -0.74
CUX1-205ENST00000425244 PROSER1Q86XN7 944 aa10.44□□□□□ -0.74
CUX1-205ENST00000425244 ZBTB2Q8N680 514 aa10.44□□□□□ -0.74
CUX1-205ENST00000425244 FBXO30Q8TB52 745 aa10.44□□□□□ -0.74
CUX1-205ENST00000425244 ATXN10Q9UBB4 475 aa10.44□□□□□ -0.74
CUX1-205ENST00000425244 MAGEL2Q9UJ55 1249 aa10.44□□□□□ -0.74
CUX1-205ENST00000425244 WDR37Q9Y2I8 494 aa10.44□□□□□ -0.74
CUX1-205ENST00000425244 MAGED1Q9Y5V3 778 aaPredicted RBP10.44□□□□□ -0.74
CUX1-205ENST00000425244 GLYATL1P3A0A0U1RQE8 302 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 GAPDHSO14556 408 aaPredicted RBP10.43□□□□□ -0.74
CUX1-205ENST00000425244 BMP10O95393 424 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 UMPSP11172 480 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 TYRP14679 529 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 DGKAP23743 735 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 FSHRP23945 695 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 DDX6P26196 483 aaKnown RBP eCLIP10.43□□□□□ -0.749e-7■■■□□ 16.7
CUX1-205ENST00000425244 MRPL19P49406 292 aaKnown RBP10.43□□□□□ -0.74
CUX1-205ENST00000425244 CDK9P50750 372 aaKnown RBP10.43□□□□□ -0.74
CUX1-205ENST00000425244 AP1S1P61966 158 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 LMAN2Q12907 356 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 TMED1Q13445 227 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 ABRAXAS1Q6UWZ7 409 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 TSPAN33Q86UF1 283 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 ADGRG2Q8IZP9 1017 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 KRTCAP2Q8N6L1 136 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 SLC13A3Q8WWT9 602 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 PPP3R2Q96LZ3 170 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 DCUN1D5Q9BTE7 237 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 BDH2Q9BUT1 245 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 C2orf49Q9BVC5 232 aaPredicted RBP10.43□□□□□ -0.74
CUX1-205ENST00000425244 VAPAQ9P0L0 249 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 EIF3LQ9Y262 564 aaKnown RBP10.43□□□□□ -0.74
CUX1-205ENST00000425244 OR51B4Q9Y5P0 310 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 RGS14O43566 566 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 SEC22BO75396 215 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 KCNH1O95259 989 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 BPIP17213 487 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 HLA-FP30511 346 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 STK19P49842 368 aaPredicted RBP10.43□□□□□ -0.74
CUX1-205ENST00000425244 PWP1Q13610 501 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 CYBRD1Q53TN4 286 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 FAM78AQ5JUQ0 283 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 RETSATQ6NUM9 610 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 NPAS3Q8IXF0 933 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 CLEC4FQ8N1N0 589 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 LIX1Q8N485 282 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 DPP10Q8N608 796 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 DCAF4L2Q8NA75 395 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 LEMD2Q8NC56 503 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 PDPRQ8NCN5 879 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 OR10A6Q8NH74 314 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 RSPRY1Q96DX4 576 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 PDLIM5Q96HC4 596 aaKnown RBP10.43□□□□□ -0.74
CUX1-205ENST00000425244 CLDND1Q9NY35 253 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 EBF1Q9UH73 591 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 PTBP2Q9UKA9 531 aaKnown RBP10.43□□□□□ -0.74
CUX1-205ENST00000425244 ZNF490Q9ULM2 529 aaPredicted RBP10.43□□□□□ -0.74
CUX1-205ENST00000425244 OARD1Q9Y530 152 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 PCDHB3Q9Y5E6 796 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 LOC730098B7Z3J9 87 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 ULK1O75385 1050 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 LATS1O95835 1130 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 TRBC1P01850 177 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 ALBP02768 609 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 ANXA6P08133 673 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 CDH1P12830 882 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 EEF1B2P24534 225 aaKnown RBP10.43□□□□□ -0.74
CUX1-205ENST00000425244 CTSOP43234 321 aaPredicted RBP10.43□□□□□ -0.74
CUX1-205ENST00000425244 ZNF77Q15935 545 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 CPSF6Q16630 551 aaKnown RBP eCLIP10.43□□□□□ -0.74
CUX1-205ENST00000425244 MAPKAPK3Q16644 382 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 LRRC73Q5JTD7 316 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 SPANXN4Q5MJ08 99 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 ZNF783Q6ZMS7 281 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 CCDC80Q76M96 950 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 RTL10Q7L3V2 364 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 STK32CQ86UX6 486 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 FAM86B1Q8N7N1 296 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 SMYD1Q8NB12 490 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 OR2T12Q8NG77 320 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 IRF7Q92985 503 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 NCLNQ969V3 563 aa10.43□□□□□ -0.74
CUX1-205ENST00000425244 ISG20Q96AZ6 181 aaKnown RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms