RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 ZXDCQ2QGD7 858 aaPredicted RBP13.85□□□□□ -0.19
SF3B1-204ENST00000414963 ZNF678Q5SXM1 525 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 ATG16L1Q676U5 607 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 TAX1BP1Q86VP1 789 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 RBM12BQ8IXT5 1001 aaKnown RBP13.85□□□□□ -0.19
SF3B1-204ENST00000414963 NAGSQ8N159 534 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 OR56A3Q8NH54 315 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 HMGCLL1Q8TB92 370 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 ZDHHC1Q8WTX9 485 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 CNDP1Q96KN2 507 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 TMEM237Q96Q45 408 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 EGFL8Q99944 293 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 TRMOQ9BU70 441 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 SLC40A1Q9NP59 571 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 POT1Q9NUX5 634 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 UCKL1Q9NWZ5 548 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 SPATA7Q9P0W8 599 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 STOX2Q9P2F5 926 aaPredicted RBP13.85□□□□□ -0.19
SF3B1-204ENST00000414963 ADAM21Q9UKJ8 722 aa13.85□□□□□ -0.19
SF3B1-204ENST00000414963 NCF1BA6NI72 391 aaPredicted RBP13.84□□□□□ -0.19
SF3B1-204ENST00000414963 NCF1CA8MVU1 366 aaPredicted RBP13.84□□□□□ -0.19
SF3B1-204ENST00000414963 PATE3B3GLJ2 98 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 TMEM114B3SHH9 223 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 KHNYNO15037 678 aaKnown RBP13.84□□□□□ -0.19
SF3B1-204ENST00000414963 NPHS1O60500 1241 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 SNNO75324 88 aaPredicted RBP13.84□□□□□ -0.19
SF3B1-204ENST00000414963 SNUPNO95149 360 aaKnown RBP13.84□□□□□ -0.19
SF3B1-204ENST00000414963 CER1O95813 267 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 GIMD1P0DJR0 217 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 NEFHP12036 1026 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 NCF1P14598 390 aaPredicted RBP13.84□□□□□ -0.19
SF3B1-204ENST00000414963 IMPA1P29218 277 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 AGTR2P50052 363 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 GALNT1Q10472 559 aaPredicted RBP13.84□□□□□ -0.19
SF3B1-204ENST00000414963 BNIP3Q12983 259 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 STX3Q13277 289 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 KRT33BQ14525 404 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 UNC50Q53HI1 259 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 CES4AQ5XG92 561 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 ANKS6Q68DC2 871 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 DUS1LQ6P1R4 473 aaKnown RBP13.84□□□□□ -0.19
SF3B1-204ENST00000414963 AGTRAPQ6RW13 159 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 MBOAT1Q6ZNC8 495 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 LRRC56Q8IYG6 542 aaPredicted RBP13.84□□□□□ -0.19
SF3B1-204ENST00000414963 LRRC8CQ8TDW0 803 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 SLC37A2Q8TED4 501 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 SAP25Q8TEE9 199 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 ZNF483Q8TF39 744 aaPredicted RBP13.84□□□□□ -0.19
SF3B1-204ENST00000414963 ZNF480Q8WV37 535 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 CXorf40BQ96DE9 158 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 TMEM79Q9BSE2 394 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 RAB11FIP5Q9BXF6 653 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 NUSAP1Q9BXS6 441 aaKnown RBP13.84□□□□□ -0.19
SF3B1-204ENST00000414963 CAPS2Q9BXY5 557 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 TWSG1Q9GZX9 223 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 DRC3Q9H069 523 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 UCK1Q9HA47 277 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 CPNE7Q9UBL6 633 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 LNPEPQ9UIQ6 1025 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 DOLKQ9UPQ8 538 aa13.84□□□□□ -0.19
SF3B1-204ENST00000414963 SRRM3A6NNA2 597 aaPredicted RBP13.83□□□□□ -0.2
SF3B1-204ENST00000414963 ZNF839A8K0R7 811 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 E7ENX8 843 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 E2F3O00716 465 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 PCDHGA12O60330 932 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 NOBOXO60393 691 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 SDC3O75056 442 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 STK16O75716 305 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 SIX3O95343 332 aaPredicted RBP13.83□□□□□ -0.2
SF3B1-204ENST00000414963 EEF1DP29692 281 aaKnown RBP13.83□□□□□ -0.2
SF3B1-204ENST00000414963 FASLGP48023 281 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 PIK3CGP48736 1102 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 PNLIPRP1P54315 467 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 TAP2Q03519 686 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 BST1Q10588 318 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 PRKG2Q13237 762 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 C18orf21Q32NC0 220 aaPredicted RBP13.83□□□□□ -0.2
SF3B1-204ENST00000414963 CFAP157Q5JU67 520 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 C6orf132Q5T0Z8 1188 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.83□□□□□ -0.2
SF3B1-204ENST00000414963 FRMD7Q6ZUT3 714 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 SLC9B2Q86UD5 537 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 RAB42Q8N4Z0 105 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 GPR156Q8NFN8 814 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 PPP1R14CQ8TAE6 165 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 MAPK15Q8TD08 544 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 HGH1Q9BTY7 390 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 SGPP1Q9BX95 441 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 GSTO2Q9H4Y5 243 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 SLC32A1Q9H598 525 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 GAREM1Q9H706 876 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 FSCN3Q9NQT6 498 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 THAP1Q9NVV9 213 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 NLGN3Q9NZ94 848 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 WWOXQ9NZC7 414 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 PCTPQ9UKL6 214 aa13.83□□□□□ -0.2
SF3B1-204ENST00000414963 TDRKHQ9Y2W6 561 aaKnown RBP13.83□□□□□ -0.2
SF3B1-204ENST00000414963 PCDH15Q96QU1 1955 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 TRBV23OR9-2A0A075B6M9 112 aa13.82□□□□□ -0.2
SF3B1-204ENST00000414963 PRAMEF33A0A0G2JMD5 474 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms