RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 ZNF501Q96CX3 271 aaPredicted RBP6.19□□□□□ -1.42
USP54-202ENST00000413442 PDLIM5Q96HC4 596 aaKnown RBP6.19□□□□□ -1.42
USP54-202ENST00000413442 TRAPPC9Q96Q05 1148 aa6.19□□□□□ -1.42
USP54-202ENST00000413442 OR2A14Q96R47 310 aa6.19□□□□□ -1.42
USP54-202ENST00000413442 ERP44Q9BS26 406 aa6.19□□□□□ -1.42
USP54-202ENST00000413442 TRIM54Q9BYV2 358 aa6.19□□□□□ -1.42
USP54-202ENST00000413442 ULBP3Q9BZM4 244 aa6.19□□□□□ -1.42
USP54-202ENST00000413442 PCBD2Q9H0N5 130 aa6.19□□□□□ -1.42
USP54-202ENST00000413442 DDX47Q9H0S4 455 aaKnown RBP6.19□□□□□ -1.42
USP54-202ENST00000413442 GPN2Q9H9Y4 310 aaPredicted RBP6.19□□□□□ -1.42
USP54-202ENST00000413442 C20orf96Q9NUD7 363 aaPredicted RBP6.19□□□□□ -1.42
USP54-202ENST00000413442 ACTR10Q9NZ32 417 aa6.19□□□□□ -1.42
USP54-202ENST00000413442 TMEM9Q9P0T7 183 aa6.19□□□□□ -1.42
USP54-202ENST00000413442 PLCL2Q9UPR0 1127 aa6.19□□□□□ -1.42
USP54-202ENST00000413442 UTP11Q9Y3A2 253 aaKnown RBP6.19□□□□□ -1.42
USP54-202ENST00000413442 PCDHGB7Q9Y5F8 929 aa6.19□□□□□ -1.42
USP54-202ENST00000413442 SDK2Q58EX2 2172 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 ANKRD11Q6UB99 2663 aaPredicted RBP6.18□□□□□ -1.42
USP54-202ENST00000413442 A0A0J9YY10 115 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 TCRBV7S3A2A0A539 114 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 CCDC189A1A4V9 331 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 GSAPA4D1B5 854 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 PABPN1LA6NDY0 278 aaKnown RBP6.18□□□□□ -1.42
USP54-202ENST00000413442 OR51F1A6NGY5 319 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 EFCAB8A8MWE9 144 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 ISM1B1AKI9 464 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 E7EQ34 232 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 E7ESA3 106 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 BTN3A3O00478 584 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 BTN3A1O00481 513 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 CCL22O00626 93 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 ZNF185O15231 689 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 PRICKLE3O43900 615 aaPredicted RBP6.18□□□□□ -1.42
USP54-202ENST00000413442 AVILO75366 819 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 PSIP1O75475 530 aaKnown RBP6.18□□□□□ -1.42
USP54-202ENST00000413442 SCRG1O75711 98 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 TMEM63AO94886 807 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 SEC31AO94979 1220 aaKnown RBP6.18□□□□□ -1.42
USP54-202ENST00000413442 ALBP02768 609 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 C8GP07360 202 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 CHRM5P08912 532 aaPredicted RBP6.18□□□□□ -1.42
USP54-202ENST00000413442 HIST1H2AGP0C0S8 130 aaPredicted RBP6.18□□□□□ -1.42
USP54-202ENST00000413442 TCN2P20062 427 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 HIST1H2ADP20671 130 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 ITGAXP20702 1163 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 MPSTP25325 297 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 ARNTP27540 789 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 FMO4P31512 558 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 CCR10P46092 362 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 VPS41P49754 854 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 SEPHS1P49903 392 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 EIF3BP55884 814 aaKnown RBP6.18□□□□□ -1.42
USP54-202ENST00000413442 ITGA1P56199 1179 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 CRADDP78560 199 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 ABRQ12979 859 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 PRKG2Q13237 762 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 SP140Q13342 867 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 TRIP13Q15645 432 aaPredicted RBP6.18□□□□□ -1.42
USP54-202ENST00000413442 CYP2A13Q16696 494 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 GLE1Q53GS7 698 aaKnown RBP6.18□□□□□ -1.42
USP54-202ENST00000413442 ARHGAP40Q5TG30 622 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 NIPAL1Q6NVV3 410 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 BORAQ6PGQ7 559 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 CCDC91Q7Z6B0 441 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 SYVN1Q86TM6 617 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 PRUNE1Q86TP1 453 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 KCNMB4Q86W47 210 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 TMEM126BQ8IUX1 230 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 ZBTB2Q8N680 514 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 C2CD4AQ8NCU7 369 aaPredicted RBP6.18□□□□□ -1.42
USP54-202ENST00000413442 MNS1Q8NEH6 495 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 OR5AR1Q8NGP9 310 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 OR9A1PQ8NGU1 263 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 APOBEC4Q8WW27 367 aaKnown RBP6.18□□□□□ -1.42
USP54-202ENST00000413442 ATL1Q8WXF7 558 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 ASB11Q8WXH4 323 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 SMPDL3AQ92484 453 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 SLC39A7Q92504 469 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 CDKL2Q92772 493 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 ZNF669Q96BR6 464 aaPredicted RBP6.18□□□□□ -1.42
USP54-202ENST00000413442 THAP11Q96EK4 314 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 CERS2Q96G23 380 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 MED8Q96G25 268 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 VPS39Q96JC1 886 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 HIST1H2AHQ96KK5 128 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 HIST1H2AJQ99878 128 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 ARHGAP9Q9BRR9 750 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 H2AFJQ9BTM1 129 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 SLC12A9Q9BXP2 914 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 NLNQ9BYT8 704 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 SLC7A5P2Q9GIP4 190 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 POPDC3Q9HBV1 291 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 LHX9Q9NQ69 397 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 PIH1D1Q9NWS0 290 aaKnown RBP6.18□□□□□ -1.42
USP54-202ENST00000413442 SOHLH2Q9NX45 425 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 FOXJ2Q9P0K8 574 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 CAMSAP3Q9P1Y5 1249 aaPredicted RBP6.18□□□□□ -1.42
USP54-202ENST00000413442 MARCH4Q9P2E8 410 aaPredicted RBP6.18□□□□□ -1.42
USP54-202ENST00000413442 ZC3H7BQ9UGR2 993 aaKnown RBP6.18□□□□□ -1.42
USP54-202ENST00000413442 KLHL3Q9UH77 587 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms