RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 TEX19Q8NA77 164 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 DQX1Q8TE96 717 aaKnown RBP6.38□□□□□ -1.39
USP40-202ENST00000409945 NDRG1Q92597 394 aaKnown RBP6.38□□□□□ -1.39
USP40-202ENST00000409945 AKAP1Q92667 903 aaKnown RBP eCLIP6.38□□□□□ -1.39
USP40-202ENST00000409945 KLK15Q9H2R5 256 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 DDIT4Q9NX09 232 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 PLK2Q9NYY3 685 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.38□□□□□ -1.39
USP40-202ENST00000409945 MYO6Q9UM54 1294 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 NFU1Q9UMS0 254 aa6.38□□□□□ -1.39
USP40-202ENST00000409945 ZFHX2Q9C0A1 2572 aaPredicted RBP6.38□□□□□ -1.39
USP40-202ENST00000409945 MBD3L5A6NJ08 208 aaPredicted RBP6.37□□□□□ -1.39
USP40-202ENST00000409945 K7EQS6 105 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 PAPSS1O43252 624 aaPredicted RBP6.37□□□□□ -1.39
USP40-202ENST00000409945 MSI1O43347 362 aaKnown RBP6.37□□□□□ -1.39
USP40-202ENST00000409945 TSPAN3O60637 253 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 LRP3O75074 770 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 ZNF217O75362 1048 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 DAB1O75553 588 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 MOCS2O96007 188 aaPredicted RBP6.37□□□□□ -1.39
USP40-202ENST00000409945 MT-CO3P00414 261 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 PENKP01210 267 aaPredicted RBP6.37□□□□□ -1.39
USP40-202ENST00000409945 CALB1P05937 261 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 TPM1P09493 284 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 ACADMP11310 421 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 POLR2EP19388 210 aaKnown RBP6.37□□□□□ -1.39
USP40-202ENST00000409945 IDUAP35475 653 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 CDR2Q01850 454 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 CDK18Q07002 472 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 ANO7Q6IWH7 933 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 RETSATQ6NUM9 610 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 LRRC31Q6UY01 552 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 SLC26A9Q7LBE3 791 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 CHSY1Q86X52 802 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 MFN1Q8IWA4 741 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 SPC24Q8NBT2 197 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 NELL1Q92832 810 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 CPXM1Q96SM3 734 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 NUP58Q9BVL2 599 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 TOR3AQ9H497 397 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 FBRSL1Q9HCM7 1045 aaKnown RBP6.37□□□□□ -1.39
USP40-202ENST00000409945 ZNF69Q9UC07 566 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 STOML2Q9UJZ1 356 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 NAALADL1Q9UQQ1 740 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 SYNJ2BP-COX16A0A087WUM0 186 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 H0Y626 953 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 PRRG2O14669 202 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 TBL1XO60907 577 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 CALCAP01258 141 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 KLKB1P03952 638 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 RETP07949 1114 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 ZNF18P17022 549 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 CDH5P33151 784 aaPredicted RBP6.37□□□□□ -1.39
USP40-202ENST00000409945 MATKP42679 507 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 AVPR1BP47901 424 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 CLK3P49761 638 aaKnown RBP6.37□□□□□ -1.39
USP40-202ENST00000409945 SULT1E1P49888 294 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 GSDMDP57764 484 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 COL10A1Q03692 680 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 NME3Q13232 169 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 KPNB1Q14974 876 aaKnown RBP6.37□□□□□ -1.39
USP40-202ENST00000409945 BRMS1LQ5PSV4 323 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 FAM180BQ6P0A1 224 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 SERPINA13PQ6UXR4 307 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 SLC36A4Q6YBV0 504 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 FAM183BPQ6ZVS7 135 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 SLC29A4Q7RTT9 530 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 BHLHA9Q7RTU4 235 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 MAATS1Q7Z4T9 603 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 FAM217AQ8IXS0 508 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 DEFB106AQ8N104 65 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 IL17RCQ8NAC3 791 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 KCNJ9Q92806 393 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 CINPQ9BW66 212 aaPredicted RBP6.37□□□□□ -1.39
USP40-202ENST00000409945 GATA5Q9BWX5 397 aaPredicted RBP6.37□□□□□ -1.39
USP40-202ENST00000409945 EDEM3Q9BZQ6 932 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 CTDSP1Q9GZU7 261 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 GANQ9H2C0 597 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 ACP6Q9NPH0 428 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 COX16Q9P0S2 106 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 ENTPD2Q9Y5L3 495 aa6.37□□□□□ -1.39
USP40-202ENST00000409945 TCRBV21S2A2A0A5A6 115 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 NPIPB13A6NJU9 1138 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 NPIPB5A8MRT5 1133 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 C17orf100A8MU93 164 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 KCNU1A8MYU2 1149 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 NPIPB4C9JG80 1138 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 GOLGA8SH3BPF8 625 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 RRHO14718 337 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 RNASEH1O60930 286 aaKnown RBP6.36□□□□□ -1.39
USP40-202ENST00000409945 GRAP2O75791 330 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 C1QL1O75973 258 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 IGLV3-27P01718 113 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 PNMA6AP0CW24 399 aaPredicted RBP6.36□□□□□ -1.39
USP40-202ENST00000409945 IGFBP2P18065 325 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 MMP8P22894 467 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 PRPH2P23942 346 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 SDC4P31431 198 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 GGT5P36269 586 aa6.36□□□□□ -1.39
USP40-202ENST00000409945 GABRB2P47870 512 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms