RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 POPDC3Q9HBV1 291 aa20.52■□□□□ 0.88
CTCF-202ENST00000401394 C8orf4Q9NR00 106 aa20.52■□□□□ 0.88
CTCF-202ENST00000401394 ZNF490Q9ULM2 529 aaPredicted RBP20.52■□□□□ 0.88
CTCF-202ENST00000401394 RAI2Q9Y5P3 530 aa20.52■□□□□ 0.88
CTCF-202ENST00000401394 TTC34A8MYJ7 566 aa20.52■□□□□ 0.88
CTCF-202ENST00000401394 PSMD11O00231 422 aa20.52■□□□□ 0.88
CTCF-202ENST00000401394 GABARAPO95166 117 aa20.52■□□□□ 0.88
CTCF-202ENST00000401394 VIPP01282 170 aa20.52■□□□□ 0.88
CTCF-202ENST00000401394 TCEA1P23193 301 aaKnown RBP20.52■□□□□ 0.88
CTCF-202ENST00000401394 TWF1Q12792 350 aa20.52■□□□□ 0.88
CTCF-202ENST00000401394 EPS8Q12929 822 aa20.52■□□□□ 0.88
CTCF-202ENST00000401394 KAT8Q9H7Z6 458 aaKnown RBP20.52■□□□□ 0.88
CTCF-202ENST00000401394 DCAF13Q9NV06 445 aaKnown RBP20.52■□□□□ 0.88
CTCF-202ENST00000401394 ERVK-11Q9UQG0 969 aa20.52■□□□□ 0.88
CTCF-202ENST00000401394 B3GNT3Q9Y2A9 372 aa20.52■□□□□ 0.88
CTCF-202ENST00000401394 ARNTLO00327 626 aa20.52■□□□□ 0.87
CTCF-202ENST00000401394 DGKEP52429 567 aa20.52■□□□□ 0.87
CTCF-202ENST00000401394 GRIK2Q13002 908 aa20.52■□□□□ 0.87
CTCF-202ENST00000401394 TUSC3Q13454 348 aa20.52■□□□□ 0.87
CTCF-202ENST00000401394 LDLRAD1Q5T700 205 aa20.52■□□□□ 0.87
CTCF-202ENST00000401394 OR6Q1Q8NGQ2 317 aa20.52■□□□□ 0.87
CTCF-202ENST00000401394 GKN1Q9NS71 199 aa20.52■□□□□ 0.87
CTCF-202ENST00000401394 C3orf18Q9UK00 162 aa20.52■□□□□ 0.87
CTCF-202ENST00000401394 SCML2Q9UQR0 700 aa20.52■□□□□ 0.87
CTCF-202ENST00000401394 STX7O15400 261 aaKnown RBP20.51■□□□□ 0.87
CTCF-202ENST00000401394 SEC24AO95486 1093 aa20.51■□□□□ 0.87
CTCF-202ENST00000401394 TACR2P21452 398 aa20.51■□□□□ 0.87
CTCF-202ENST00000401394 AQP1P29972 269 aa20.51■□□□□ 0.87
CTCF-202ENST00000401394 ATXN7L2Q5T6C5 722 aaPredicted RBP20.51■□□□□ 0.87
CTCF-202ENST00000401394 PLEKHG7Q6ZR37 379 aa20.51■□□□□ 0.87
CTCF-202ENST00000401394 ZDHHC21Q8IVQ6 265 aa20.51■□□□□ 0.87
CTCF-202ENST00000401394 MICU2Q8IYU8 434 aa20.51■□□□□ 0.87
CTCF-202ENST00000401394 ATP6V0D2Q8N8Y2 350 aa20.51■□□□□ 0.87
CTCF-202ENST00000401394 DYNC2LI1Q8TCX1 351 aa20.51■□□□□ 0.87
CTCF-202ENST00000401394 PROX1Q92786 737 aa20.51■□□□□ 0.87
CTCF-202ENST00000401394 ZNF300Q96RE9 604 aaPredicted RBP20.51■□□□□ 0.87
CTCF-202ENST00000401394 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.51■□□□□ 0.87
CTCF-202ENST00000401394 QPCTLQ9NXS2 382 aa20.51■□□□□ 0.87
CTCF-202ENST00000401394 NLRC5Q86WI3 1866 aa20.51■□□□□ 0.87
CTCF-202ENST00000401394 C2orf81A6NN90 581 aa20.51■□□□□ 0.87
CTCF-202ENST00000401394 PGLSO95336 258 aa20.51■□□□□ 0.87
CTCF-202ENST00000401394 TP53BP2Q13625 1128 aa20.51■□□□□ 0.87
CTCF-202ENST00000401394 RSPO2Q6UXX9 243 aaPredicted RBP20.51■□□□□ 0.87
CTCF-202ENST00000401394 WBP2Q969T9 261 aa20.51■□□□□ 0.87
CTCF-202ENST00000401394 FAM120BQ96EK7 910 aaKnown RBP20.51■□□□□ 0.87
CTCF-202ENST00000401394 C1QTNF3Q9BXJ4 246 aa20.51■□□□□ 0.87
CTCF-202ENST00000401394 SLIRPQ9GZT3 109 aaKnown RBP20.51■□□□□ 0.87
CTCF-202ENST00000401394 C6orf62Q9GZU0 229 aaPredicted RBP20.51■□□□□ 0.87
CTCF-202ENST00000401394 PTPRDP23468 1912 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 INSIG1O15503 277 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 GRK5P34947 590 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 LIPAP38571 399 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 CPT1AP50416 773 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 NUDT6P53370 316 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 CYP4F2P78329 520 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 VLDLRP98155 873 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 RUNDC3AQ59EK9 446 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 ARMC12Q5T9G4 340 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 CPZQ66K79 652 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 LRRC8DQ7L1W4 858 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 LGALS12Q96DT0 336 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 SUSD3Q96L08 255 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 TSPAN18Q96SJ8 248 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 KRT20P35900 424 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 SLC35A2P78381 396 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 CREMQ03060 361 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 HIST2H2ACQ16777 129 aaPredicted RBP20.5■□□□□ 0.87
CTCF-202ENST00000401394 DOK6Q6PKX4 331 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 DENND1CQ8IV53 801 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 OR8J3Q8NGG0 315 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 OR5K1Q8NHB7 308 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 CDC26Q8NHZ8 85 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 YIPF6Q96EC8 236 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 MAGEE1Q9HCI5 957 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 PCDHB9Q9Y5E1 797 aa20.5■□□□□ 0.87
CTCF-202ENST00000401394 NT5C1B-RDH14C9J2C7 533 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 IRF1P10914 325 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 DBTP11182 482 aaKnown RBP20.49■□□□□ 0.87
CTCF-202ENST00000401394 CD36P16671 472 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 TNFRSF1BP20333 461 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 LPOP22079 712 aaPredicted RBP20.49■□□□□ 0.87
CTCF-202ENST00000401394 AKT1P31749 480 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 EBPLQ9BY08 206 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 PDP1Q9P0J1 537 aaPredicted RBP20.49■□□□□ 0.87
CTCF-202ENST00000401394 ANGPTL3Q9Y5C1 460 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 A0A0C4DFX4 3053 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 UNC80Q8N2C7 3258 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 RECQL5O94762 991 aaPredicted RBP20.49■□□□□ 0.87
CTCF-202ENST00000401394 GJB5O95377 273 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 BCKDHAP12694 445 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 CD40LGP29965 261 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 HOXA9P31269 272 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 HTR7P34969 479 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 TAF1AQ15573 450 aaPredicted RBP20.49■□□□□ 0.87
CTCF-202ENST00000401394 PARP15Q460N3 678 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 FAM171A1Q5VUB5 890 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 PIK3C3Q8NEB9 887 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 TAS2R16Q9NYV7 291 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 SLC6A14Q9UN76 642 aa20.49■□□□□ 0.87
CTCF-202ENST00000401394 GMPPBQ9Y5P6 360 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms