RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 PPP1R16AQ96I34 528 aa19.32■□□□□ 0.68
SHANK1-203ENST00000391813 BCL7BQ9BQE9 202 aa19.32■□□□□ 0.68
SHANK1-203ENST00000391813 TMEM246Q9BRR3 403 aa19.32■□□□□ 0.68
SHANK1-203ENST00000391813 SGK2Q9HBY8 427 aa19.32■□□□□ 0.68
SHANK1-203ENST00000391813 NECTIN3Q9NQS3 549 aa19.32■□□□□ 0.68
SHANK1-203ENST00000391813 GTF2IRD1Q9UHL9 959 aa19.32■□□□□ 0.68
SHANK1-203ENST00000391813 DOT1LQ8TEK3 1739 aa19.32■□□□□ 0.68
SHANK1-203ENST00000391813 GOT2P00505 430 aaKnown RBP19.31■□□□□ 0.68
SHANK1-203ENST00000391813 BRCC3P46736 316 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 ATAT1Q5SQI0 421 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 C16orf59Q7L2K0 433 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 ZBTB2Q8N680 514 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 VANGL1Q8TAA9 524 aaPredicted RBP19.31■□□□□ 0.68
SHANK1-203ENST00000391813 EXOC2Q96KP1 924 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 C11orf84Q9BUA3 381 aaPredicted RBP19.31■□□□□ 0.68
SHANK1-203ENST00000391813 RDH8Q9NYR8 311 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 CRYBG1Q9Y4K1 1723 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 TMEM233B4DJY2 109 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 DLGAP1O14490 977 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 C22orf31O95567 290 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 VARSP26640 1264 aaKnown RBP19.31■□□□□ 0.68
SHANK1-203ENST00000391813 CSTF2P33240 577 aaKnown RBP eCLIP19.31■□□□□ 0.68
SHANK1-203ENST00000391813 PTGER3P43115 390 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 CEACAM7Q14002 265 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 SMCO1Q147U7 214 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 FAM151BQ6UXP7 276 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 ANKRD46Q86W74 232 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 HBEGFQ99075 208 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 XPNPEP1Q9NQW7 623 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 A8MX80 341 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 ERP29P30040 261 aaKnown RBP19.31■□□□□ 0.68
SHANK1-203ENST00000391813 PNLIPRP1P54315 467 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 NRLP54845 237 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 VBP1P61758 197 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 SKP1P63208 163 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 FNDC3BQ53EP0 1204 aaKnown RBP19.31■□□□□ 0.68
SHANK1-203ENST00000391813 BEND5Q7L4P6 421 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 CHST15Q7LFX5 561 aaPredicted RBP19.31■□□□□ 0.68
SHANK1-203ENST00000391813 KLHL6Q8WZ60 621 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 TIFAQ96CG3 184 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 CCDC3Q9BQI4 270 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 IL1RAPQ9NPH3 570 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 RUVBL1Q9Y265 456 aaKnown RBP19.31■□□□□ 0.68
SHANK1-203ENST00000391813 MYOCOSA0A1B0GUC4 107 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 NME6O75414 186 aaPredicted RBP19.31■□□□□ 0.68
SHANK1-203ENST00000391813 CLIC3O95833 236 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 PIGRP01833 764 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 MAGEA2P43356 314 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 TBRG1Q3YBR2 411 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 ZNF613Q6PF04 617 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 PHC2Q8IXK0 858 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 PIWIL1Q96J94 861 aaKnown RBP19.31■□□□□ 0.68
SHANK1-203ENST00000391813 UPB1Q9UBR1 384 aa19.31■□□□□ 0.68
SHANK1-203ENST00000391813 ZNF282Q9UDV7 671 aaPredicted RBP19.31■□□□□ 0.68
SHANK1-203ENST00000391813 SPIN1Q9Y657 262 aaPredicted RBP19.31■□□□□ 0.68
SHANK1-203ENST00000391813 RFPL2O75678 378 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 APOL3O95236 402 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 ZNF806P0C7X5 589 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 ASPAP45381 313 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 DSC3Q14574 896 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 ZDHHC20Q5W0Z9 365 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 OR9I1Q8NGQ6 314 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 C3orf14Q9HBI5 128 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 POLR1DQ9Y2S0 133 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 ABHD14A-ACY1A0A1B0GW23 586 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 XPNPEP2O43895 674 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 CHRNA1P02708 482 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 GRIA2P42262 883 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 RPIAP49247 311 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 C11orf91Q3C1V1 193 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 ZNF792Q3KQV3 632 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 DDX59Q5T1V6 619 aaKnown RBP eCLIP19.3■□□□□ 0.68
SHANK1-203ENST00000391813 PLPP4Q5VZY2 271 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 SLC30A8Q8IWU4 369 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 CRYBG2Q8N1P7 616 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 TM6SF2Q9BZW4 377 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 TXNRD2Q9NNW7 524 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 RNF19AQ9NV58 838 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 STOX2Q9P2F5 926 aaPredicted RBP19.3■□□□□ 0.68
SHANK1-203ENST00000391813 KIAA1614Q5VZ46 1190 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 CAPN13Q6MZZ7 669 aaPredicted RBP19.3■□□□□ 0.68
SHANK1-203ENST00000391813 ZNF431Q8TF32 576 aaPredicted RBP19.3■□□□□ 0.68
SHANK1-203ENST00000391813 TBC1D17Q9HA65 648 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 EBF1Q9UH73 591 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 FBXW11Q9UKB1 542 aa19.3■□□□□ 0.68
SHANK1-203ENST00000391813 FAM25EA8MYX2 175 aa19.29■□□□□ 0.68
SHANK1-203ENST00000391813 BHMG1C9JSJ3 638 aaPredicted RBP19.29■□□□□ 0.68
SHANK1-203ENST00000391813 IVDP26440 423 aa19.29■□□□□ 0.68
SHANK1-203ENST00000391813 RFC2P35250 354 aa19.29■□□□□ 0.68
SHANK1-203ENST00000391813 PFKPQ01813 784 aa19.29■□□□□ 0.68
SHANK1-203ENST00000391813 DSC2Q02487 901 aa19.29■□□□□ 0.68
SHANK1-203ENST00000391813 MBTD1Q05BQ5 628 aa19.29■□□□□ 0.68
SHANK1-203ENST00000391813 MADCAM1Q13477 382 aa19.29■□□□□ 0.68
SHANK1-203ENST00000391813 RNASE12Q5GAN4 147 aaKnown RBP19.29■□□□□ 0.68
SHANK1-203ENST00000391813 SMYD5Q6GMV2 418 aa19.29■□□□□ 0.68
SHANK1-203ENST00000391813 SLC37A3Q8NCC5 494 aa19.29■□□□□ 0.68
SHANK1-203ENST00000391813 POLR2J3Q9H1A7 115 aaKnown RBP19.29■□□□□ 0.68
SHANK1-203ENST00000391813 HIST1H2ABP04908 130 aa19.29■□□□□ 0.68
SHANK1-203ENST00000391813 PFKMP08237 780 aa19.29■□□□□ 0.68
SHANK1-203ENST00000391813 HOXD12P35452 270 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms