RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 CDT1Q9H211 546 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 SH3BGRL3Q9H299 93 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 OXSMQ9NWU1 459 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 COMMD9Q9P000 198 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 DNAJB11Q9UBS4 358 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 RWDD2AQ9UIY3 292 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 CDH22Q9UJ99 828 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 ERRFI1Q9UJM3 462 aaPredicted RBP4.02□□□□□ -1.77
USH2A-202ENST00000366942 FOXD3Q9UJU5 478 aaPredicted RBP4.02□□□□□ -1.77
USH2A-202ENST00000366942 FBXL3Q9UKT7 428 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 BLOC1S6Q9UL45 172 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 ABCG2Q9UNQ0 655 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 TRIOBPQ9H2D6 2365 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 MROH1Q8NDA8 1641 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 PNMA6EA0A0J9YXQ4 647 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 TEX51A0A1B0GUA7 166 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 SMIM31A0A1B0GVY4 71 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 C5orf60A6NFR6 353 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 LIN7AO14910 233 aaPredicted RBP4.02□□□□□ -1.77
USH2A-202ENST00000366942 ZNF623O75123 536 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 MYL2P10916 166 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 PRF1P14222 555 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 ATP6V1B1P15313 513 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 NPPBP16860 134 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 AOC1P19801 751 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 APLNRP35414 380 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 CSNK2A1P68400 391 aaPredicted RBP4.02□□□□□ -1.77
USH2A-202ENST00000366942 DLX2Q07687 328 aaPredicted RBP4.02□□□□□ -1.77
USH2A-202ENST00000366942 BTNL3Q6UXE8 466 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 USP30Q70CQ3 517 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 MILR1Q7Z6M3 343 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 FUKQ8N0W3 1084 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 SLC39A11Q8N1S5 342 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 ARL10Q8N8L6 244 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 MFSD2AQ8NA29 543 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 OR1N1Q8NGS0 311 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 FEZF2Q8TBJ5 459 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 AUTS2Q8WXX7 1259 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 MMABQ96EY8 250 aaPredicted RBP4.02□□□□□ -1.77
USH2A-202ENST00000366942 TWNKQ96RR1 684 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 VRK1Q99986 396 aaPredicted RBP4.02□□□□□ -1.77
USH2A-202ENST00000366942 RAB1BQ9H0U4 201 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 IKZF4Q9H2S9 585 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 PRTFDC1Q9NRG1 225 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 RAB6BQ9NRW1 208 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 UTS2RQ9UKP6 389 aa4.02□□□□□ -1.77
USH2A-202ENST00000366942 A0A1B0GUA9 196 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 A0A1W2PP55 124 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 BLACEA4D250 179 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 BUB1BO60566 1050 aaPredicted RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 TYRP1P17643 537 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 TALDO1P37837 337 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 GRIA4P48058 902 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 RFX5P48382 616 aaPredicted RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 CD151P48509 253 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 IST1P53990 364 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 RAB25P57735 213 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 HEPACAMQ14CZ8 416 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 CHRNA6Q15825 494 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 CDKN3Q16667 212 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 GPAT3Q53EU6 434 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ALG10Q5BKT4 473 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ZNF470Q6ECI4 717 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 SPNS3Q6ZMD2 512 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 TRMT10CQ7L0Y3 403 aaKnown RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 SGMS1Q86VZ5 419 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 PNLDC1Q8NA58 520 aaKnown RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 IL31RAQ8NI17 732 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 NPLOC4Q8TAT6 608 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ART4Q93070 314 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 FAM162AQ96A26 154 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ERP27Q96DN0 273 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ECSITQ9BQ95 431 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 SH2D3AQ9BRG2 576 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 MKKSQ9NPJ1 570 aaPredicted RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 METTL5Q9NRN9 209 aaKnown RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 MTMR10Q9NXD2 777 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 LRIT1Q9P2V4 623 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 MMP17Q9ULZ9 603 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 BCLAF3A2AJT9 711 aaKnown RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 TLR4O00206 839 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 PRMT5O14744 637 aaPredicted RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 ATG12O94817 140 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 HAPLN1P10915 354 aaPredicted RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 GABRA1P14867 456 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ZNF81P51508 661 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 PTPRNQ16849 979 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 PMF1Q6P1K2 205 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ZNF783Q6ZMS7 281 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 RNF111Q6ZNA4 994 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 SLC22A15Q8IZD6 547 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 OR2AP1Q8NGE2 309 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ZCCHC10Q8TBK6 192 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 HM13Q8TCT9 377 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 SLC2A12Q8TD20 617 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 CORO2AQ92828 525 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 ZNF641Q96N77 438 aaPredicted RBP4.01□□□□□ -1.77
USH2A-202ENST00000366942 CCT8L2Q96SF2 557 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 SEMA3CQ99985 751 aa4.01□□□□□ -1.77
USH2A-202ENST00000366942 DPH2Q9BQC3 489 aaPredicted RBP4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms