RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 EFCAB14O75071 495 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 BMP10O95393 424 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 TIMP1P01033 207 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 CDH2P19022 906 aaPredicted RBP20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 CAPGP40121 348 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 SLC6A12P48065 614 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 NEK2P51955 445 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 POLR2LP62875 67 aaKnown RBP20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 SLC44A4Q53GD3 710 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 RUNDC3AQ59EK9 446 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 SERPINA13PQ6UXR4 307 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 ADIPOR2Q86V24 386 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 ZNF548Q8NEK5 533 aaPredicted RBP20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 BEGAINQ9BUH8 593 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 DLGAP4Q9Y2H0 992 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 A0A1W2PQ67 120 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 TRIM43BA6NCK2 446 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 TRIM64CA6NLI5 447 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 GFYI3L273 518 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 PRSS23O95084 383 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 HIST1H2AGP0C0S8 130 aaPredicted RBP20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 MPC1LP0DKB6 136 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 HIST1H2ADP20671 130 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 PHC1P78364 1004 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 MAP7Q14244 749 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 PTCHD3Q3KNS1 767 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 GGTA1PQ4G0N0 100 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 FAM98BQ52LJ0 330 aaKnown RBP20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 NEK5Q6P3R8 708 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 TNIP2Q8NFZ5 429 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 SELENOMQ8WWX9 145 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 FIG4Q92562 907 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 IRF7Q92985 503 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 TRIM43Q96BQ3 446 aaPredicted RBP20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 PYCR2Q96C36 320 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 HIST1H2AHQ96KK5 128 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 HIST1H2AJQ99878 128 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 P2RY13Q9BPV8 354 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 H2AFJQ9BTM1 129 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 LINC00597Q9H2U6 94 aa20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 CARS2Q9HA77 564 aaKnown RBP20.32■□□□□ 0.84
CCDC88B-203ENST00000359902 TRIM64A6NGJ6 449 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 WASH3PC4AMC7 463 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 MTX2O75431 263 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 GMNNO75496 209 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 SNAP29O95721 258 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 HNMTP50135 292 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 HTRA3P83110 453 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 BOP1Q14137 746 aaKnown RBP20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 PLEKHS1Q5SXH7 462 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 DNAJC14Q6Y2X3 702 aaPredicted RBP20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 OTOP2Q7RTS6 562 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 EGFL6Q8IUX8 553 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 FAM86B1Q8N7N1 296 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 SCAMP4Q969E2 229 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 SLC6A13Q9NSD5 602 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 PKD2L2Q9NZM6 624 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 SNX6Q9UNH7 406 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 HELZP42694 1942 aaKnown RBP20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 TRBV5-3A0A0A0MS03 114 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 KLHL33A6NCF5 533 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 GSTA4O15217 222 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 SEC24DO94855 1032 aaPredicted RBP20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 CLDN8P56748 225 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 RPS14P62263 151 aaKnown RBP20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 CHRNB3Q05901 458 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 TEAD2Q15562 447 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 GTDC1Q4AE62 458 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 SH3GL1Q99961 368 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 ELOVL6Q9H5J4 265 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 TUBA8Q9NY65 449 aaPredicted RBP20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 THEGQ9P2T0 379 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 PCDHGA11Q9Y5H2 935 aa20.31■□□□□ 0.84
CCDC88B-203ENST00000359902 DEAF1O75398 565 aaPredicted RBP20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 MOSPD3O75425 235 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 PCNAP12004 261 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 TYRP14679 529 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 ADARB1P78563 741 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 TMEM215Q68D42 235 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 TMEM214Q6NUQ4 689 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 HSD11B1LQ7Z5J1 315 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 ALDH16A1Q8IZ83 802 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 L3MBTL4Q8NA19 623 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 PAIP1Q9H074 479 aaKnown RBP20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 SOX17Q9H6I2 414 aaPredicted RBP20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 ADGRE2Q9UHX3 823 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 A0A087WXM4 84 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 KRT87PA6NCN2 255 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 SLC16A5O15375 505 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 SGTAO43765 313 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 PRAMEF4O60810 478 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 SLC5A2P31639 672 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 ERVFC1P60507 584 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 LRRC26Q2I0M4 334 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 OTUD3Q5T2D3 398 aaPredicted RBP20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 PRAMEF9Q5VWM5 478 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 BRAT1Q6PJG6 821 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 ENPP6Q6UWR7 440 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 USP51Q70EK9 711 aa20.3■□□□□ 0.84
CCDC88B-203ENST00000359902 PATL1Q86TB9 770 aaKnown RBP20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms