RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 SBSNQ6UWP8 590 aa21.49■■□□□ 1.03
SHMT1-203ENST00000354098 TBC1D1Q86TI0 1168 aaPredicted RBP21.49■■□□□ 1.03
SHMT1-203ENST00000354098 IQCKQ8N0W5 287 aa21.49■■□□□ 1.03
SHMT1-203ENST00000354098 LINC01555Q8NAE3 123 aa21.49■■□□□ 1.03
SHMT1-203ENST00000354098 FBXO15Q8NCQ5 510 aaPredicted RBP21.49■■□□□ 1.03
SHMT1-203ENST00000354098 OR9A1PQ8NGU1 263 aa21.49■■□□□ 1.03
SHMT1-203ENST00000354098 PARVBQ9HBI1 364 aa21.49■■□□□ 1.03
SHMT1-203ENST00000354098 A0A087X1B8 175 aa21.48■■□□□ 1.03
SHMT1-203ENST00000354098 A0A1W2PPM1 405 aa21.48■■□□□ 1.03
SHMT1-203ENST00000354098 OR5K3A6NET4 321 aa21.48■■□□□ 1.03
SHMT1-203ENST00000354098 D6RAR5 112 aa21.48■■□□□ 1.03
SHMT1-203ENST00000354098 MYO1CO00159 1063 aa21.48■■□□□ 1.03
SHMT1-203ENST00000354098 SLC16A5O15375 505 aa21.48■■□□□ 1.03
SHMT1-203ENST00000354098 CDH16O75309 829 aa21.48■■□□□ 1.03
SHMT1-203ENST00000354098 CDK4P11802 303 aa21.48■■□□□ 1.03
SHMT1-203ENST00000354098 POLR2CP19387 275 aaPredicted RBP21.48■■□□□ 1.03
SHMT1-203ENST00000354098 PKLRP30613 574 aa21.48■■□□□ 1.03
SHMT1-203ENST00000354098 SHMT2P34897 504 aa21.48■■□□□ 1.03
SHMT1-203ENST00000354098 RAB28P51157 221 aa21.48■■□□□ 1.03
SHMT1-203ENST00000354098 SP140Q13342 867 aa21.48■■□□□ 1.03
SHMT1-203ENST00000354098 RASA2Q15283 850 aa21.48■■□□□ 1.03
SHMT1-203ENST00000354098 TAF1BQ53T94 588 aaPredicted RBP21.48■■□□□ 1.03
SHMT1-203ENST00000354098 HES3Q5TGS1 186 aa21.48■■□□□ 1.03
SHMT1-203ENST00000354098 MBOAT1Q6ZNC8 495 aa21.48■■□□□ 1.03
SHMT1-203ENST00000354098 TIFABQ6ZNK6 161 aa21.48■■□□□ 1.03
SHMT1-203ENST00000354098 ADGRF3Q8IZF5 1079 aa21.48■■□□□ 1.03
SHMT1-203ENST00000354098 PLD6Q8N2A8 252 aaKnown RBP21.48■■□□□ 1.03
SHMT1-203ENST00000354098 MCOLN3Q8TDD5 553 aa21.48■■□□□ 1.03
SHMT1-203ENST00000354098 ADAMTS14Q8WXS8 1223 aa21.48■■□□□ 1.03
SHMT1-203ENST00000354098 ANKRD7Q92527 254 aa21.48■■□□□ 1.03
SHMT1-203ENST00000354098 PTERQ96BW5 349 aa21.48■■□□□ 1.03
SHMT1-203ENST00000354098 ZMYND15Q9H091 742 aa21.48■■□□□ 1.03
SHMT1-203ENST00000354098 EPB41L1Q9H4G0 881 aa21.48■■□□□ 1.03
SHMT1-203ENST00000354098 UTP6Q9NYH9 597 aaKnown RBP21.48■■□□□ 1.03
SHMT1-203ENST00000354098 TOP3BO95985 862 aaKnown RBP21.47■■□□□ 1.03
SHMT1-203ENST00000354098 LTA4HP09960 611 aaKnown RBP21.47■■□□□ 1.03
SHMT1-203ENST00000354098 CYP2A7P20853 494 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 PDX1P52945 283 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 GFERP55789 205 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 PPP1R3AQ16821 1122 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 CDCP2Q5VXM1 449 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 CHCHD4Q8N4Q1 142 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 WDR48Q8TAF3 677 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 GOLGA8RI6L899 631 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 CAPN5O15484 640 aaPredicted RBP21.47■■□□□ 1.03
SHMT1-203ENST00000354098 KDM1AO60341 852 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 SLC16A8O95907 504 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 MT-CO3P00414 261 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 MPOP05164 745 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 SLC26A3P40879 764 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 ATP6V0D1P61421 351 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 ZNF844Q08AG5 666 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 FASTKQ14296 549 aaKnown RBP21.47■■□□□ 1.03
SHMT1-203ENST00000354098 OR4D1Q15615 310 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 KLHL35Q6PF15 583 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 WDR74Q6RFH5 385 aaPredicted RBP21.47■■□□□ 1.03
SHMT1-203ENST00000354098 RBM44Q6ZP01 1051 aaKnown RBP21.47■■□□□ 1.03
SHMT1-203ENST00000354098 DGLUCYQ7Z3D6 616 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 B3GNT8Q7Z7M8 397 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 TAX1BP1Q86VP1 789 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 OOSP2Q86WS3 158 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 MARCH9Q86YJ5 346 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 ZIM3Q96PE6 472 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 ROPN1BQ9BZX4 212 aaPredicted RBP21.47■■□□□ 1.03
SHMT1-203ENST00000354098 SEMA6CQ9H3T2 930 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 ROPN1Q9HAT0 212 aaPredicted RBP21.47■■□□□ 1.03
SHMT1-203ENST00000354098 ZNF358Q9NW07 568 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 SPHK1Q9NYA1 384 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 KLHL3Q9UH77 587 aa21.47■■□□□ 1.03
SHMT1-203ENST00000354098 COL27A1Q8IZC6 1860 aaPredicted RBP21.47■■□□□ 1.03
SHMT1-203ENST00000354098 UNC13CQ8NB66 2214 aa21.46■■□□□ 1.03
SHMT1-203ENST00000354098 FAM221BA6H8Z2 402 aa21.46■■□□□ 1.03
SHMT1-203ENST00000354098 GLRBP48167 497 aa21.46■■□□□ 1.03
SHMT1-203ENST00000354098 KCNC1P48547 511 aa21.46■■□□□ 1.03
SHMT1-203ENST00000354098 IRGCQ6NXR0 463 aa21.46■■□□□ 1.03
SHMT1-203ENST00000354098 TMEM71Q6P5X7 295 aa21.46■■□□□ 1.03
SHMT1-203ENST00000354098 CCDC91Q7Z6B0 441 aa21.46■■□□□ 1.03
SHMT1-203ENST00000354098 ISCA2Q86U28 154 aa21.46■■□□□ 1.03
SHMT1-203ENST00000354098 ZNF480Q8WV37 535 aa21.46■■□□□ 1.03
SHMT1-203ENST00000354098 GPR78Q96P69 363 aa21.46■■□□□ 1.03
SHMT1-203ENST00000354098 TGM7Q96PF1 710 aa21.46■■□□□ 1.03
SHMT1-203ENST00000354098 TMEM109Q9BVC6 243 aa21.46■■□□□ 1.03
SHMT1-203ENST00000354098 NMRAL1Q9HBL8 299 aa21.46■■□□□ 1.03
SHMT1-203ENST00000354098 OR6C2Q9NZP2 312 aa21.46■■□□□ 1.03
SHMT1-203ENST00000354098 GSAPA4D1B5 854 aa21.45■■□□□ 1.02
SHMT1-203ENST00000354098 KLHL2O95198 593 aa21.45■■□□□ 1.02
SHMT1-203ENST00000354098 GUCA1CO95843 209 aa21.45■■□□□ 1.02
SHMT1-203ENST00000354098 CHRM5P08912 532 aaPredicted RBP21.45■■□□□ 1.02
SHMT1-203ENST00000354098 H2AFXP16104 143 aaPredicted RBP21.45■■□□□ 1.02
SHMT1-203ENST00000354098 KRT15P19012 456 aa21.45■■□□□ 1.02
SHMT1-203ENST00000354098 TFEBP19484 476 aa21.45■■□□□ 1.02
SHMT1-203ENST00000354098 PEBP1P30086 187 aaKnown RBP21.45■■□□□ 1.02
SHMT1-203ENST00000354098 SNAP47Q5SQN1 464 aa21.45■■□□□ 1.02
SHMT1-203ENST00000354098 RAB44Q7Z6P3 723 aaPredicted RBP21.45■■□□□ 1.02
SHMT1-203ENST00000354098 PLXDC1Q8IUK5 500 aa21.45■■□□□ 1.02
SHMT1-203ENST00000354098 SLITRK4Q8IW52 837 aa21.45■■□□□ 1.02
SHMT1-203ENST00000354098 PPFIBP2Q8ND30 876 aa21.45■■□□□ 1.02
SHMT1-203ENST00000354098 OR2L8Q8NGY9 312 aa21.45■■□□□ 1.02
SHMT1-203ENST00000354098 KIAA1191Q96A73 305 aa21.45■■□□□ 1.02
SHMT1-203ENST00000354098 PPM1MQ96MI6 270 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms