RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 HTATIP2Q9BUP3 242 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 POLR2J3Q9H1A7 115 aaKnown RBP8.53□□□□□ -1.04
RTN3-202ENST00000339997 SOHLH2Q9NX45 425 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 KANSL3Q9P2N6 904 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 PFDN2Q9UHV9 154 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 MAFFQ9ULX9 164 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 DIP2AQ14689 1571 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 SLIT1O75093 1534 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 TRAV6A0A075B6T7 132 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 GTPBP1O00178 669 aaKnown RBP8.53□□□□□ -1.04
RTN3-202ENST00000339997 ACOX3O15254 700 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 PRLP01236 227 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 LAMP2P13473 410 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 ECHS1P30084 290 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 SDC2P34741 201 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 AGTR2P50052 363 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 MPPE1Q53F39 396 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 CMASQ8NFW8 434 aaPredicted RBP8.53□□□□□ -1.04
RTN3-202ENST00000339997 OR6K6Q8NGW6 343 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 KBTBD7Q8WVZ9 684 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 BIRC7Q96CA5 298 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 TMED9Q9BVK6 235 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 ZFP37Q9Y6Q3 630 aaPredicted RBP8.53□□□□□ -1.04
RTN3-202ENST00000339997 A0A1W2PPK0 400 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 RPN2P04844 631 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 HLA-DQB2P05538 268 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 OAZ1P54368 228 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 MLLT10P55197 1068 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 GMFBP60983 142 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 SNRPD2P62316 118 aaKnown RBP8.53□□□□□ -1.04
RTN3-202ENST00000339997 CEACAM7Q14002 265 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 GRB14Q14449 540 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 NCBP2-AS2Q69YL0 99 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 KLHL35Q6PF15 583 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 NCCRP1Q6ZVX7 275 aaPredicted RBP8.53□□□□□ -1.04
RTN3-202ENST00000339997 LINGO2Q7L985 606 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 CAND1Q86VP6 1230 aaKnown RBP8.53□□□□□ -1.04
RTN3-202ENST00000339997 FAM129CQ86XR2 697 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 TP53INP2Q8IXH6 220 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 PCSK9Q8NBP7 692 aaKnown RBP8.53□□□□□ -1.04
RTN3-202ENST00000339997 SSU72Q9NP77 194 aaKnown RBP8.53□□□□□ -1.04
RTN3-202ENST00000339997 DNAJB9Q9UBS3 223 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 GMEB1Q9Y692 573 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 SPAG17Q6Q759 2223 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 FBP2O00757 339 aa8.52□□□□□ -1.04
RTN3-202ENST00000339997 TSPAN1O60635 241 aa8.52□□□□□ -1.04
RTN3-202ENST00000339997 BMP10O95393 424 aa8.52□□□□□ -1.04
RTN3-202ENST00000339997 AMD1P17707 334 aa8.52□□□□□ -1.04
RTN3-202ENST00000339997 TLX1P31314 330 aaPredicted RBP8.52□□□□□ -1.04
RTN3-202ENST00000339997 GLUD2P49448 558 aa8.52□□□□□ -1.04
RTN3-202ENST00000339997 PTGR1Q14914 329 aa8.52□□□□□ -1.04
RTN3-202ENST00000339997 ZBTB2Q8N680 514 aa8.52□□□□□ -1.04
RTN3-202ENST00000339997 ZCCHC10Q8TBK6 192 aa8.52□□□□□ -1.04
RTN3-202ENST00000339997 TEFMQ96QE5 360 aaKnown RBP8.52□□□□□ -1.04
RTN3-202ENST00000339997 PEBP4Q96S96 227 aa8.52□□□□□ -1.04
RTN3-202ENST00000339997 CGREF1Q99674 301 aa8.52□□□□□ -1.04
RTN3-202ENST00000339997 FAIM2Q9BWQ8 316 aa8.52□□□□□ -1.04
RTN3-202ENST00000339997 HIPK3Q9H422 1215 aa8.52□□□□□ -1.04
RTN3-202ENST00000339997 MAPRE3Q9UPY8 281 aa8.52□□□□□ -1.04
RTN3-202ENST00000339997 PTPRJQ12913 1337 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 M0QX08 132 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 PER2O15055 1255 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 MATN3O15232 486 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 CDRT1O95170 752 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 LYPLA2O95372 231 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 IFNA6P05013 189 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 SLC35G4P0C7Q5 338 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 SLC2A2P11168 524 aaPredicted RBP8.52□□□□□ -1.05
RTN3-202ENST00000339997 CKMT1AP12532 417 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 AOC1P19801 751 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 AXLP30530 894 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 GCNT6Q5T4J0 391 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 ZNF648Q5T619 568 aaPredicted RBP8.52□□□□□ -1.05
RTN3-202ENST00000339997 MBLAC2Q68D91 279 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 ZC3HC1Q86WB0 502 aaKnown RBP8.52□□□□□ -1.05
RTN3-202ENST00000339997 OR10G2Q8NGC3 310 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 ROPN1LQ96C74 230 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 HEPHQ9BQS7 1158 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 SLC25A51Q9H1U9 297 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 MRPL17Q9NRX2 175 aaKnown RBP8.52□□□□□ -1.05
RTN3-202ENST00000339997 A0A088AWK7 358 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 LOC100130705A0A1B0GUX0 176 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 INPPL1O15357 1258 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 PRODHO43272 600 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 B4GAT1O43505 415 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 ECI2O75521 394 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 RFPL1O75677 317 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 CYP11A1P05108 521 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 S100GP29377 79 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 ARL2P36404 184 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 RAB39AQ14964 217 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 PLEKHG6Q3KR16 790 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 PDCD4Q53EL6 469 aaKnown RBP8.52□□□□□ -1.05
RTN3-202ENST00000339997 MSANTD2Q6P1R3 559 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 ARL9Q6T311 187 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 PLPPR4Q7Z2D5 763 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 ITIH5Q86UX2 942 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 C17orf64Q86WR6 236 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 LGI4Q8N135 537 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 CCDC120Q96HB5 630 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms