RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 TUBGCP3Q96CW5 907 aa15.06■□□□□ 0
LIMS1-202ENST00000338045 SCARF2Q96GP6 870 aaPredicted RBP15.06■□□□□ 0
LIMS1-202ENST00000338045 RAB3IPQ96QF0 476 aaPredicted RBP15.06■□□□□ 0
LIMS1-202ENST00000338045 LMAN1LQ9HAT1 526 aa15.06■□□□□ 0
LIMS1-202ENST00000338045 SLC40A1Q9NP59 571 aa15.06■□□□□ 0
LIMS1-202ENST00000338045 TM7SF3Q9NS93 570 aa15.06■□□□□ 0
LIMS1-202ENST00000338045 DNAJC11Q9NVH1 559 aa15.06■□□□□ 0
LIMS1-202ENST00000338045 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.06■□□□□ 0
LIMS1-202ENST00000338045 WNT16Q9UBV4 365 aa15.06■□□□□ 0
LIMS1-202ENST00000338045 SLC22A14Q9Y267 594 aa15.06■□□□□ 0
LIMS1-202ENST00000338045 RASSF9O75901 435 aa15.05■□□□□ -0
LIMS1-202ENST00000338045 THRAP10827 490 aa15.05■□□□□ -0
LIMS1-202ENST00000338045 CPOXP36551 454 aa15.05■□□□□ -0
LIMS1-202ENST00000338045 ARL1P40616 181 aaPredicted RBP15.05■□□□□ -0
LIMS1-202ENST00000338045 HTR6P50406 440 aa15.05■□□□□ -0
LIMS1-202ENST00000338045 STARD6P59095 220 aa15.05■□□□□ -0
LIMS1-202ENST00000338045 PCDH1Q08174 1060 aa15.05■□□□□ -0
LIMS1-202ENST00000338045 FZD5Q13467 585 aa15.05■□□□□ -0
LIMS1-202ENST00000338045 PTK2BQ14289 1009 aa15.05■□□□□ -0
LIMS1-202ENST00000338045 LRRC32Q14392 662 aa15.05■□□□□ -0
LIMS1-202ENST00000338045 GRB7Q14451 532 aa15.05■□□□□ -0
LIMS1-202ENST00000338045 Q6ZSR9 355 aa15.05■□□□□ -0
LIMS1-202ENST00000338045 ADHFE1Q8IWW8 467 aa15.05■□□□□ -0
LIMS1-202ENST00000338045 L3MBTL4Q8NA19 623 aa15.05■□□□□ -0
LIMS1-202ENST00000338045 OR2T11Q8NH01 316 aa15.05■□□□□ -0
LIMS1-202ENST00000338045 FBXO27Q8NI29 283 aa15.05■□□□□ -0
LIMS1-202ENST00000338045 RP9Q8TA86 221 aaKnown RBP15.05■□□□□ -0
LIMS1-202ENST00000338045 HMGCLL1Q8TB92 370 aa15.05■□□□□ -0
LIMS1-202ENST00000338045 UHRF1Q96T88 793 aaPredicted RBP15.05■□□□□ -0
LIMS1-202ENST00000338045 TIMM29Q9BSF4 260 aa15.05■□□□□ -0
LIMS1-202ENST00000338045 CADM1Q9BY67 442 aaKnown RBP15.05■□□□□ -0
LIMS1-202ENST00000338045 SLC29A3Q9BZD2 475 aa15.05■□□□□ -0
LIMS1-202ENST00000338045 ATG10Q9H0Y0 220 aa15.05■□□□□ -0
LIMS1-202ENST00000338045 ZNHIT2Q9UHR6 403 aa15.05■□□□□ -0
LIMS1-202ENST00000338045 MRPS17Q9Y2R5 130 aaKnown RBP15.05■□□□□ -0
LIMS1-202ENST00000338045 RNF11Q9Y3C5 154 aa15.05■□□□□ -0
LIMS1-202ENST00000338045 KRBA1A5PL33 1030 aa15.04■□□□□ -0
LIMS1-202ENST00000338045 PRR19A6NJB7 356 aa15.04■□□□□ -0
LIMS1-202ENST00000338045 CACNB4O00305 520 aaPredicted RBP15.04■□□□□ -0
LIMS1-202ENST00000338045 GSC2O15499 205 aa15.04■□□□□ -0
LIMS1-202ENST00000338045 CLDN9O95484 217 aa15.04■□□□□ -0
LIMS1-202ENST00000338045 CD1EP15812 388 aa15.04■□□□□ -0
LIMS1-202ENST00000338045 HNRNPA2B1P22626 353 aaKnown RBP15.04■□□□□ -0
LIMS1-202ENST00000338045 HMOX2P30519 316 aa15.04■□□□□ -0
LIMS1-202ENST00000338045 KIAA1024LP59773 190 aa15.04■□□□□ -0
LIMS1-202ENST00000338045 GAS6Q14393 721 aa15.04■□□□□ -0
LIMS1-202ENST00000338045 FLCNQ8NFG4 579 aa15.04■□□□□ -0
LIMS1-202ENST00000338045 SPDYE1Q8NFV5 336 aaPredicted RBP15.04■□□□□ -0
LIMS1-202ENST00000338045 LTB4R2Q9NPC1 389 aa15.04■□□□□ -0
LIMS1-202ENST00000338045 INTS7Q9NVH2 962 aaKnown RBP15.04■□□□□ -0
LIMS1-202ENST00000338045 RIC8BQ9NVN3 520 aa15.04■□□□□ -0
LIMS1-202ENST00000338045 CCL27Q9Y4X3 112 aa15.04■□□□□ -0
LIMS1-202ENST00000338045 KCNE1BA0A087WTH5 132 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 LOC100653049A0A140TA62 436 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 POM121BA6NF01 834 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 PRAMEF4O60810 478 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 KCNJ13O60928 360 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 KRT34O76011 436 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 SEMA4FO95754 770 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 ITPKAP23677 461 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 MRPL19P49406 292 aaKnown RBP15.03■□□□□ -0
LIMS1-202ENST00000338045 ACADVLP49748 655 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 ZP2Q05996 745 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 NAE1Q13564 534 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 DNAL1Q4LDG9 190 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 PYCR3Q53H96 274 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 TMEM31Q5JXX7 168 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 PRAMEF9Q5VWM5 478 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 IL27RAQ6UWB1 636 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 TRIM46Q7Z4K8 759 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 SPATA19Q7Z5L4 167 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 THOC6Q86W42 341 aaKnown RBP15.03■□□□□ -0
LIMS1-202ENST00000338045 SNX31Q8N9S9 440 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 OR9A1PQ8NGU1 263 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 MAGEC3Q8TD91 643 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 USP7Q93009 1102 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 MAGEB10Q96LZ2 347 aaPredicted RBP15.03■□□□□ -0
LIMS1-202ENST00000338045 MYOCQ99972 504 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 RTKNQ9BST9 563 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 ACTR8Q9H981 624 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 GIMAP2Q9UG22 337 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 ACSL5Q9ULC5 683 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 FPGTO14772 594 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 UGDHO60701 494 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 ELF3P78545 371 aaPredicted RBP15.03■□□□□ -0
LIMS1-202ENST00000338045 CYLC2Q14093 348 aaPredicted RBP15.03■□□□□ -0
LIMS1-202ENST00000338045 ABRAXAS2Q15018 415 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 SCIMPQ6UWF3 145 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 LONP2Q86WA8 852 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 SNX32Q86XE0 403 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 ZNF480Q8WV37 535 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 TFGQ92734 400 aaPredicted RBP15.03■□□□□ -0
LIMS1-202ENST00000338045 BMFQ96LC9 184 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 OR4K3Q96R72 315 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 C2orf42Q9NWW7 574 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 ASF1AQ9Y294 204 aa15.03■□□□□ -0
LIMS1-202ENST00000338045 KANSL1LA0AUZ9 987 aa15.02■□□□□ -0
LIMS1-202ENST00000338045 PSMD12O00232 456 aaPredicted RBP15.02■□□□□ -0
LIMS1-202ENST00000338045 MANBAO00462 879 aa15.02■□□□□ -0
LIMS1-202ENST00000338045 PEX11AO75192 247 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms