RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 SLC2A6Q9UGQ3 507 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 SUSD2Q9UGT4 822 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 APOBEC3BQ9UH17 382 aaKnown RBP13.22□□□□□ -0.29
RFFL-201ENST00000315249 RAPGEFL1Q9UHV5 662 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 MYH7BA7E2Y1 1941 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 PNMA8CA0A1B0GUJ8 204 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 FAM170BA6NMN3 283 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 TLX3O43711 291 aaPredicted RBP13.22□□□□□ -0.29
RFFL-201ENST00000315249 STC2O76061 302 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 HOXA11P31270 313 aaPredicted RBP13.22□□□□□ -0.29
RFFL-201ENST00000315249 SLC34A1Q06495 639 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 TOP3AQ13472 1001 aaPredicted RBP13.22□□□□□ -0.29
RFFL-201ENST00000315249 DENND1AQ8TEH3 1009 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 DLG3Q92796 817 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 CDCA3Q99618 268 aaPredicted RBP13.22□□□□□ -0.29
RFFL-201ENST00000315249 SAMD4AQ9UPU9 718 aaKnown RBP13.22□□□□□ -0.29
RFFL-201ENST00000315249 DNAJC25-GNG10A0A024R161 153 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 SLC25A36Q96CQ1 311 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 PRDM8Q9NQV8 689 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 C3orf18Q9UK00 162 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 RUVBL1Q9Y265 456 aaKnown RBP13.22□□□□□ -0.29
RFFL-201ENST00000315249 MRPS35P82673 323 aaKnown RBP13.22□□□□□ -0.29
RFFL-201ENST00000315249 RANBP3LQ86VV4 465 aaPredicted RBP13.22□□□□□ -0.29
RFFL-201ENST00000315249 LNX2Q8N448 690 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 OXR1Q8N573 874 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 MMABQ96EY8 250 aaPredicted RBP13.22□□□□□ -0.29
RFFL-201ENST00000315249 CTPS2Q9NRF8 586 aa13.22□□□□□ -0.29
RFFL-201ENST00000315249 PCDHGA12O60330 932 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 PRAMEF11O60813 436 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 NUDT17P0C025 328 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 CST6Q15828 149 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 GFOD2Q3B7J2 385 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 CYP27C1Q4G0S4 372 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 MBOAT1Q6ZNC8 495 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 DEPDC4Q8N2C3 294 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 TMEM130Q8N3G9 435 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 WWP2O00308 870 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 SASH3O75995 380 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 ITGB1P05556 798 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 GRK6P43250 576 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 BNIP2Q12982 314 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 CRTC1Q6UUV9 634 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 SAMD14Q8IZD0 417 aaPredicted RBP13.21□□□□□ -0.29
RFFL-201ENST00000315249 ERGIC3Q9Y282 383 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 CNTRLQ7Z7A1 2325 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 HCN1O60741 890 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 CDC123O75794 336 aaPredicted RBP13.21□□□□□ -0.29
RFFL-201ENST00000315249 CORO7P57737 925 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 CSTF1Q05048 431 aaKnown RBP13.21□□□□□ -0.29
RFFL-201ENST00000315249 ELAVL3Q14576 367 aaKnown RBP13.21□□□□□ -0.29
RFFL-201ENST00000315249 ZNF527Q8NB42 609 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 KCNH6Q9H252 994 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 ZNF576Q9H609 170 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 METTL7AQ9H8H3 244 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 BACE2Q9Y5Z0 518 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 H0YC42 278 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 OR5F1O95221 314 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 SEMA4FO95754 770 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 PTPN5P54829 565 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 ZSWIM7Q19AV6 140 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 GPRIN1Q7Z2K8 1008 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 OR4K17Q8NGC6 315 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 C1orf109Q9NX04 203 aa13.21□□□□□ -0.29
RFFL-201ENST00000315249 TIPRLO75663 272 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 MFN2O95140 757 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 PGLSO95336 258 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 PGM3O95394 542 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 LCA5LO95447 670 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 HNRNPH1P31943 449 aaKnown RBP13.21□□□□□ -0.3
RFFL-201ENST00000315249 HCAR3P49019 387 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 VSX2P58304 361 aaPredicted RBP13.21□□□□□ -0.3
RFFL-201ENST00000315249 RAB8AP61006 207 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 RAB33AQ14088 237 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 WASHC2DQ5SRD0 308 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 SLC25A24Q6NUK1 477 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 SMARCD3Q6STE5 483 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 PARP8Q8N3A8 854 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 LRRC57Q8N9N7 239 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 ZNF540Q8NDQ6 660 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 EEF1AKMT1Q8WVE0 214 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 FOXJ1Q92949 421 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 SCAMP4Q969E2 229 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 OR2M4Q96R27 311 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 NPY6RQ99463 290 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 C19orf25Q9UFG5 118 aaPredicted RBP13.21□□□□□ -0.3
RFFL-201ENST00000315249 PAIP2BQ9ULR5 123 aaKnown RBP13.21□□□□□ -0.3
RFFL-201ENST00000315249 KCTD3Q9Y597 815 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 TCRBV7S3A2A0A539 114 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.21□□□□□ -0.3
RFFL-201ENST00000315249 KPNA4O00629 521 aaPredicted RBP13.21□□□□□ -0.3
RFFL-201ENST00000315249 CEBPBP17676 345 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 RCVRNP35243 200 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 LRRC26Q2I0M4 334 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 SMPDL3AQ92484 453 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 WDR92Q96MX6 357 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 SLCO3A1Q9UIG8 710 aa13.21□□□□□ -0.3
RFFL-201ENST00000315249 CPSF4LA6NMK7 179 aaKnown RBP13.2□□□□□ -0.3
RFFL-201ENST00000315249 PRR5-ARHGAP8B1AHC4 643 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 RFXAPO00287 272 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 SNX3O60493 162 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms