RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 CCRL2O00421 344 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 EEDO75530 441 aaKnown RBP18.93■□□□□ 0.62
USP48-201ENST00000308271 DDNO94850 711 aaPredicted RBP18.93■□□□□ 0.62
USP48-201ENST00000308271 FBXW4P57775 412 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 ZDHHC20Q5W0Z9 365 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 MZB1Q8WU39 189 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 LGALS12Q96DT0 336 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 ZNF599Q96NL3 588 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 KLHL31Q9H511 634 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 SEMA3GQ9NS98 782 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 TAS2R7Q9NYW3 318 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 AKAP7Q9P0M2 348 aaPredicted RBP18.93■□□□□ 0.62
USP48-201ENST00000308271 ERVK-11Q9UQG0 969 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 AKAP11Q9UKA4 1901 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 ARHGEF33A8MVX0 844 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 AP3D1O14617 1153 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 AP1G1O43747 822 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 MLLT6P55198 1093 aaPredicted RBP18.93■□□□□ 0.62
USP48-201ENST00000308271 TMEM236Q5W0B7 351 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 GPR142Q7Z601 462 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 OR4F6Q8NGB9 312 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 SCAMP5Q8TAC9 235 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 DUSP26Q9BV47 211 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 EBPLQ9BY08 206 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 ATG10Q9H0Y0 220 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 TLR6Q9Y2C9 796 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 ENPP3O14638 875 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 HCRTO43612 131 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 ACSL4O60488 711 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 BUD31P41223 144 aaPredicted RBP18.93■□□□□ 0.62
USP48-201ENST00000308271 SPANXN4Q5MJ08 99 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 CHERPQ8IWX8 916 aaKnown RBP18.93■□□□□ 0.62
USP48-201ENST00000308271 CLIP4Q8N3C7 705 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 KCNC2Q96PR1 638 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 NEK6Q9HC98 313 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 FAM118AQ9NWS6 357 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 SPG21Q9NZD8 308 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 MYO5AQ9Y4I1 1855 aaKnown RBP18.93■□□□□ 0.62
USP48-201ENST00000308271 VILLO15195 856 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 TREHO43280 583 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 RCVRNP35243 200 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 GJA9P57773 515 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 GPAT3Q53EU6 434 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 PLEKHG7Q6ZR37 379 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 VN1R5Q7Z5H4 357 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 LGI4Q8N135 537 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 UBE2J2Q8N2K1 259 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 VANGL1Q8TAA9 524 aaPredicted RBP18.93■□□□□ 0.62
USP48-201ENST00000308271 LRRC20Q8TCA0 184 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 TIFAQ96CG3 184 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 OSGEPL1Q9H4B0 414 aa18.93■□□□□ 0.62
USP48-201ENST00000308271 POLR3BQ9NW08 1133 aaPredicted RBP18.93■□□□□ 0.62
USP48-201ENST00000308271 CAPN13Q6MZZ7 669 aaPredicted RBP18.92■□□□□ 0.62
USP48-201ENST00000308271 SLC38A4Q969I6 547 aa18.92■□□□□ 0.62
USP48-201ENST00000308271 IRF2BPLQ9H1B7 796 aa18.92■□□□□ 0.62
USP48-201ENST00000308271 MAP4K5Q9Y4K4 846 aa18.92■□□□□ 0.62
USP48-201ENST00000308271 SPEF1Q9Y4P9 236 aa18.92■□□□□ 0.62
USP48-201ENST00000308271 OR6C70A6NIJ9 312 aa18.92■□□□□ 0.62
USP48-201ENST00000308271 H7C0S8 307 aa18.92■□□□□ 0.62
USP48-201ENST00000308271 SMAD3P84022 425 aaKnown RBP18.92■□□□□ 0.62
USP48-201ENST00000308271 NFKB2Q00653 900 aa18.92■□□□□ 0.62
USP48-201ENST00000308271 C2orf80Q0P641 193 aa18.92■□□□□ 0.62
USP48-201ENST00000308271 SMARCB1Q12824 385 aa18.92■□□□□ 0.62
USP48-201ENST00000308271 ALFQ53S48 1182 aa18.92■□□□□ 0.62
USP48-201ENST00000308271 PIK3R6Q5UE93 754 aa18.92■□□□□ 0.62
USP48-201ENST00000308271 CIR1Q86X95 450 aaPredicted RBP18.92■□□□□ 0.62
USP48-201ENST00000308271 PHACTR4Q8IZ21 702 aa18.92■□□□□ 0.62
USP48-201ENST00000308271 ZNF557Q8N988 423 aaPredicted RBP18.92■□□□□ 0.62
USP48-201ENST00000308271 ATAD1Q8NBU5 361 aa18.92■□□□□ 0.62
USP48-201ENST00000308271 PHOX2BQ99453 314 aa18.92■□□□□ 0.62
USP48-201ENST00000308271 TMEM181Q9P2C4 612 aa18.92■□□□□ 0.62
USP48-201ENST00000308271 GTF2A1LQ9UNN4 478 aa18.92■□□□□ 0.62
USP48-201ENST00000308271 TCRBV3S1A0A5B6 114 aa18.92■□□□□ 0.62
USP48-201ENST00000308271 HTR3EA5X5Y0 456 aa18.92■□□□□ 0.62
USP48-201ENST00000308271 PPP5CP53041 499 aa18.92■□□□□ 0.62
USP48-201ENST00000308271 E2F2Q14209 437 aa18.92■□□□□ 0.62
USP48-201ENST00000308271 CRTC2Q53ET0 693 aaPredicted RBP18.92■□□□□ 0.62
USP48-201ENST00000308271 ASCC1Q8N9N2 400 aaKnown RBP18.92■□□□□ 0.62
USP48-201ENST00000308271 OR6K2Q8NGY2 324 aa18.92■□□□□ 0.62
USP48-201ENST00000308271 TRIM8Q9BZR9 551 aa18.92■□□□□ 0.62
USP48-201ENST00000308271 THUMPD1Q9NXG2 353 aaKnown RBP18.92■□□□□ 0.62
USP48-201ENST00000308271 SPATA7Q9P0W8 599 aa18.92■□□□□ 0.62
USP48-201ENST00000308271 ENGP17813 658 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 PSMD4P55036 377 aaKnown RBP18.91■□□□□ 0.62
USP48-201ENST00000308271 PIGFQ07326 219 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 TAZQ16635 292 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 TPGS1Q6ZTW0 290 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 ARNTL2Q8WYA1 636 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 EFHD2Q96C19 240 aaPredicted RBP18.91■□□□□ 0.62
USP48-201ENST00000308271 SLC29A3Q9BZD2 475 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 C11orf16Q9NQ32 467 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 ZNF224Q9NZL3 707 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 VPS51Q9UID3 782 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 A0A1B0GVM2 712 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 RGS20O76081 388 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 C8GP07360 202 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 ZNF778Q96MU6 729 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 ZNF382Q96SR6 550 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 CPNE5Q9HCH3 593 aa18.91■□□□□ 0.62
USP48-201ENST00000308271 CD1DP15813 335 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms