RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ERVK-6Q9BXR3 956 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 DUSP16Q9BY84 665 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 ALG2Q9H553 416 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 RPF2Q9H7B2 306 aaKnown RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 PDGFCQ9NRA1 345 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 NRAPQ86VF7 1730 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 SHANK3Q9BYB0 1731 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 ZCWPW2A0A1B0GU75 182 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 CXorf49A8MYA2 514 aaPredicted RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 EIF3FO00303 357 aaPredicted RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 RGS14O43566 566 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 ZBTB14O43829 449 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 DLX3O60479 287 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 ITGA10O75578 1167 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 SLC22A3O75751 556 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 UPP2O95045 317 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 LTFP02788 710 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 UROSP10746 265 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 PRPS2P11908 318 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 PVALBP20472 110 aaPredicted RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 CBX2Q14781 532 aaPredicted RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 FXNQ16595 210 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 KCTD8Q6ZWB6 473 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 PTAR1Q7Z6K3 402 aaPredicted RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 MMAAQ8IVH4 418 aaKnown RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 IGDCC3Q8IVU1 814 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 ZFPM1Q8IX07 1006 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 TIGD4Q8IY51 512 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 SLC22A8Q8TCC7 542 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 TCTEX1D2Q8WW35 142 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 NKD1Q969G9 470 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 PHF21BQ96EK2 531 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 SLC29A3Q9BZD2 475 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 BIN3Q9NQY0 253 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 MTMR10Q9NXD2 777 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 ANKMY1Q9P2S6 941 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 ASF1AQ9Y294 204 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 QSER1Q2KHR3 1735 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 B8ZZF3 427 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 TBX1O43435 398 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 ZMPSTE24O75844 475 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 EDNRBP24530 442 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 PTPN3P26045 913 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 TCF7P36402 384 aaPredicted RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 GPR162Q16538 588 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 LRRN1Q6UXK5 716 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 CCDC71Q8IV32 467 aaPredicted RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 GHDCQ8N2G8 530 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 FNDC5Q8NAU1 212 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 ZNF548Q8NEK5 533 aaPredicted RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 REPS2Q8NFH8 660 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 IL31RAQ8NI17 732 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 CEP76Q8TAP6 659 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 USP7Q93009 1102 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 ACSF2Q96CM8 615 aaPredicted RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 GPR63Q9BZJ6 419 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 POMKQ9H5K3 350 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 NUDT4Q9NZJ9 180 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 TJP2Q9UDY2 1190 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 PCDHGA7Q9Y5G6 932 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 H3BMQ9 156 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 PLD2O14939 933 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 GABARAPO95166 117 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 MPSTP25325 297 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 PNLIPRP1P54315 467 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 ARSFP54793 590 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 FADDQ13158 208 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 FGL2Q14314 439 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 BTBD16Q32M84 506 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 ZNF621Q6ZSS3 439 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 ZNF534Q76KX8 674 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 METTL3Q86U44 580 aaKnown RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 DCP2Q8IU60 420 aaKnown RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 LGI2Q8N0V4 545 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 C2CD4AQ8NCU7 369 aaPredicted RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 MFSD8Q8NHS3 518 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 CHTF18Q8WVB6 975 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 BTN2A3PQ96KV6 586 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 COG8Q96MW5 612 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 SERPINB11Q96P15 392 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 OR2M4Q96R27 311 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 WDR83Q9BRX9 315 aaKnown RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 NPLQ9BXD5 320 aaPredicted RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 NOL11Q9H8H0 719 aaKnown RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 BRD9Q9H8M2 597 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 ASIC5Q9NY37 505 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 PPP4R1LQ9P1A2 415 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 POLR3HQ9Y535 204 aaPredicted RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 A0A0J9YYE9 177 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 C2orf81A6NN90 581 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 APOC3P02656 99 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 ITGA2P17301 1181 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 PSMB4P28070 264 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 HOXD12P35452 270 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 UGT2B10P36537 528 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 HTRA4P83105 476 aaPredicted RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 ECT2LQ008S8 904 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 KEAP1Q14145 624 aa6.29□□□□□ -1.4
VPS35-201ENST00000299138 ELOAQ14241 798 aaKnown RBP6.29□□□□□ -1.4
VPS35-201ENST00000299138 TMEM44Q2T9K0 475 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms