RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 TIMP2P16035 220 aa23.38■■□□□ 1.33
TRIM54-201ENST00000296098 EPCAMP16422 314 aa23.38■■□□□ 1.33
TRIM54-201ENST00000296098 HENMT1Q5T8I9 393 aaKnown RBP23.38■■□□□ 1.33
TRIM54-201ENST00000296098 DTWD1Q8N5C7 304 aa23.38■■□□□ 1.33
TRIM54-201ENST00000296098 SPPL3Q8TCT6 385 aa23.38■■□□□ 1.33
TRIM54-201ENST00000296098 MCOLN3Q8TDD5 553 aa23.38■■□□□ 1.33
TRIM54-201ENST00000296098 OSCP1Q8WVF1 389 aa23.38■■□□□ 1.33
TRIM54-201ENST00000296098 ARMC5Q96C12 935 aa23.38■■□□□ 1.33
TRIM54-201ENST00000296098 P2RY13Q9BPV8 354 aa23.38■■□□□ 1.33
TRIM54-201ENST00000296098 ZSCAN5AQ9BUG6 496 aa23.38■■□□□ 1.33
TRIM54-201ENST00000296098 RIOK2Q9BVS4 552 aaKnown RBP23.38■■□□□ 1.33
TRIM54-201ENST00000296098 NIPSNAP3AQ9UFN0 247 aaPredicted RBP23.38■■□□□ 1.33
TRIM54-201ENST00000296098 PGRP06401 933 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 HNRNPA1P09651 372 aaKnown RBP eCLIP23.37■■□□□ 1.33
TRIM54-201ENST00000296098 BCKDHAP12694 445 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 ATP6V1B1P15313 513 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 XPAP23025 273 aaPredicted RBP23.37■■□□□ 1.33
TRIM54-201ENST00000296098 POLE2P56282 527 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 SPRED1Q7Z699 444 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 ING5Q8WYH8 240 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 PYCR2Q96C36 320 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 TIFAQ96CG3 184 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 PNPLA3Q9NST1 481 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 DNAJC11Q9NVH1 559 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 V9GYQ6 96 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 RNF103-CHMP3A0A140T963 221 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 FADS2P1A8MWK0 482 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 SLC9A3R1O14745 358 aaPredicted RBP23.37■■□□□ 1.33
TRIM54-201ENST00000296098 SGTAO43765 313 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 TLL1O43897 1013 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 RASAL1O95294 804 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 CDH1P12830 882 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 GGT1P19440 569 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 WEE1P30291 646 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 SLC44A4Q53GD3 710 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 NEK5Q6P3R8 708 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 DPPA4Q7L190 304 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 GRASPQ7Z6J2 395 aaPredicted RBP23.37■■□□□ 1.33
TRIM54-201ENST00000296098 AADATQ8N5Z0 425 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 L3MBTL4Q8NA19 623 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 CLHC1Q8NHS4 586 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 ASZ1Q8WWH4 475 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 TFAP2CQ92754 450 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 CCDC115Q96NT0 180 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 SEPHS2Q99611 448 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 MTG2Q9H4K7 406 aa23.37■■□□□ 1.33
TRIM54-201ENST00000296098 PAPOLBQ9NRJ5 636 aaKnown RBP23.37■■□□□ 1.33
TRIM54-201ENST00000296098 LDLRP01130 860 aa23.36■■□□□ 1.33
TRIM54-201ENST00000296098 CEBPBP17676 345 aa23.36■■□□□ 1.33
TRIM54-201ENST00000296098 RPS14P62263 151 aaKnown RBP23.36■■□□□ 1.33
TRIM54-201ENST00000296098 ZNF284Q2VY69 593 aa23.36■■□□□ 1.33
TRIM54-201ENST00000296098 ZNF805Q5CZA5 627 aa23.36■■□□□ 1.33
TRIM54-201ENST00000296098 BEND7Q8N7W2 519 aaPredicted RBP23.36■■□□□ 1.33
TRIM54-201ENST00000296098 OR2AG2A6NM03 316 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 QSOX1O00391 747 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 TULP3O75386 442 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 ANXA6P08133 673 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 C7P10643 843 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 GSTT1P30711 240 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 CYP4F3Q08477 520 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 FBXO46Q6PJ61 603 aaPredicted RBP23.35■■□□□ 1.33
TRIM54-201ENST00000296098 SLC30A9Q6PML9 568 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 OR2T12Q8NG77 320 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 ZNF583Q96ND8 569 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 OR52E6Q96RD3 313 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 GRIP2Q9C0E4 1043 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 DKK3Q9UBP4 350 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 SLC22A14Q9Y267 594 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 DLGAP4Q9Y2H0 992 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 KRT87PA6NCN2 255 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 DLGAP1O14490 977 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 ACOX3O15254 700 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 GMNNO75496 209 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 GSTM1P09488 218 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 SYN1P17600 705 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 ITPKAP23677 461 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 PRPH2P23942 346 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 GSTM4Q03013 218 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 ZNF648Q5T619 568 aaPredicted RBP23.35■■□□□ 1.33
TRIM54-201ENST00000296098 ZNF697Q5TEC3 545 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 DNAJC14Q6Y2X3 702 aaPredicted RBP23.35■■□□□ 1.33
TRIM54-201ENST00000296098 METTL25Q8N6Q8 603 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 FBXL8Q96CD0 374 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 LRIG1Q96JA1 1093 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 MAGEB10Q96LZ2 347 aaPredicted RBP23.35■■□□□ 1.33
TRIM54-201ENST00000296098 RNF145Q96MT1 663 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 CHID1Q9BWS9 393 aa23.35■■□□□ 1.33
TRIM54-201ENST00000296098 MKI67P46013 3256 aaKnown RBP23.34■■□□□ 1.33
TRIM54-201ENST00000296098 PLOD2O00469 737 aa23.34■■□□□ 1.33
TRIM54-201ENST00000296098 SLCO2B1O94956 709 aa23.34■■□□□ 1.33
TRIM54-201ENST00000296098 MT-ND1P03886 318 aa23.34■■□□□ 1.33
TRIM54-201ENST00000296098 PRPS2P11908 318 aa23.34■■□□□ 1.33
TRIM54-201ENST00000296098 FPGSQ05932 587 aa23.34■■□□□ 1.33
TRIM54-201ENST00000296098 DHCR24Q15392 516 aa23.34■■□□□ 1.33
TRIM54-201ENST00000296098 POM121L1PQ3SYA9 428 aa23.34■■□□□ 1.33
TRIM54-201ENST00000296098 NADK2Q4G0N4 442 aa23.34■■□□□ 1.33
TRIM54-201ENST00000296098 SYTL3Q4VX76 610 aa23.34■■□□□ 1.33
TRIM54-201ENST00000296098 RASGRP3Q8IV61 690 aa23.34■■□□□ 1.33
TRIM54-201ENST00000296098 MSRB3Q8IXL7 192 aa23.34■■□□□ 1.33
TRIM54-201ENST00000296098 RAVER1Q8IY67 606 aaKnown RBP23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms