RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 GALPQ9UBC7 116 aa11.25□□□□□ -0.61
USP53-201ENST00000274030 A0A1W2PRB8 838 aa11.25□□□□□ -0.61
USP53-201ENST00000274030 ZNF879B4DU55 563 aa11.25□□□□□ -0.61
USP53-201ENST00000274030 WNT9AO14904 365 aa11.25□□□□□ -0.61
USP53-201ENST00000274030 AREL1O15033 823 aa11.25□□□□□ -0.61
USP53-201ENST00000274030 B3GALT2O43825 422 aa11.25□□□□□ -0.61
USP53-201ENST00000274030 SCGNO76038 276 aa11.25□□□□□ -0.61
USP53-201ENST00000274030 SDC2P34741 201 aa11.25□□□□□ -0.61
USP53-201ENST00000274030 DRICH1Q6PGQ1 229 aaPredicted RBP11.25□□□□□ -0.61
USP53-201ENST00000274030 GLIS1Q8NBF1 620 aa11.25□□□□□ -0.61
USP53-201ENST00000274030 OR2L5Q8NG80 312 aa11.25□□□□□ -0.61
USP53-201ENST00000274030 NUS1Q96E22 293 aa11.25□□□□□ -0.61
USP53-201ENST00000274030 CDKN2AIPNLQ96HQ2 116 aa11.25□□□□□ -0.61
USP53-201ENST00000274030 ELAC1Q9H777 363 aaKnown RBP11.25□□□□□ -0.61
USP53-201ENST00000274030 EIF2B3Q9NR50 452 aaKnown RBP11.25□□□□□ -0.61
USP53-201ENST00000274030 FAUP35544 74 aaKnown RBP11.25□□□□□ -0.61
USP53-201ENST00000274030 GDF5P43026 501 aa11.25□□□□□ -0.61
USP53-201ENST00000274030 TXNL4AP83876 142 aaKnown RBP11.25□□□□□ -0.61
USP53-201ENST00000274030 SMCO1Q147U7 214 aa11.25□□□□□ -0.61
USP53-201ENST00000274030 ADGRF1Q5T601 910 aa11.25□□□□□ -0.61
USP53-201ENST00000274030 TMEM145Q8NBT3 493 aa11.25□□□□□ -0.61
USP53-201ENST00000274030 OR10Q1Q8NGQ4 319 aa11.25□□□□□ -0.61
USP53-201ENST00000274030 CITED4Q96RK1 184 aa11.25□□□□□ -0.61
USP53-201ENST00000274030 YIPF1Q9Y548 306 aa11.25□□□□□ -0.61
USP53-201ENST00000274030 KCTD3Q9Y597 815 aa11.25□□□□□ -0.61
USP53-201ENST00000274030 DNAJA2O60884 412 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 ECI2O75521 394 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 CRTC2Q53ET0 693 aaPredicted RBP11.24□□□□□ -0.61
USP53-201ENST00000274030 MBLAC2Q68D91 279 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 CHERPQ8IWX8 916 aaKnown RBP11.24□□□□□ -0.61
USP53-201ENST00000274030 TRPV1Q8NER1 839 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 SLC35B2Q8TB61 432 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 EFHD2Q96C19 240 aaPredicted RBP11.24□□□□□ -0.61
USP53-201ENST00000274030 FUBP3Q96I24 572 aaKnown RBP eCLIP11.24□□□□□ -0.61
USP53-201ENST00000274030 TBC1D24Q9ULP9 559 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 ERVK-11Q9UQG0 969 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 PDLIM1O00151 329 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 HAS3O00219 553 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 EI24O14681 340 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 TULP3O75386 442 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 CLDN7O95471 211 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 TSC22D1Q15714 1073 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 ZNF280BQ86YH2 543 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 CMTM8Q8IZV2 173 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 SLC25A36Q96CQ1 311 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 ZFP3Q96NJ6 502 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 OR52B2Q96RD2 323 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 MUC13Q9H3R2 512 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 COPS7AQ9UBW8 275 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 SLC22A14Q9Y267 594 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 GABRDO14764 452 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 CBX5P45973 191 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 HERVK_113P63132 956 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 PRKD1Q15139 912 aaPredicted RBP11.24□□□□□ -0.61
USP53-201ENST00000274030 TOR1AIP1Q5JTV8 583 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 GDPD4Q6W3E5 623 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 ZBED6CLQ96FA7 236 aaPredicted RBP11.24□□□□□ -0.61
USP53-201ENST00000274030 ERVK-6Q9BXR3 956 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 SSU72Q9NP77 194 aaKnown RBP11.24□□□□□ -0.61
USP53-201ENST00000274030 PCDHGA3Q9Y5H0 932 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 A0A0J9YVX5 310 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 B4DGG1 531 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 GDI1P31150 447 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 GRK6P43250 576 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 HADHBP55084 474 aaKnown RBP11.24□□□□□ -0.61
USP53-201ENST00000274030 TLR1Q15399 786 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 ACSBG2Q5FVE4 666 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 GPATCH1Q9BRR8 931 aaKnown RBP11.24□□□□□ -0.61
USP53-201ENST00000274030 AKTIPQ9H8T0 292 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 BRD7Q9NPI1 651 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 PNO1Q9NRX1 252 aaKnown RBP11.24□□□□□ -0.61
USP53-201ENST00000274030 SNTG1Q9NSN8 517 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 CNTN3Q9P232 1028 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 GBAP04062 536 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 CLCN7P51798 805 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 GMFBP60983 142 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 GPR68Q15743 365 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 KIAA1161Q6NSJ0 714 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 GRHL3Q8TE85 626 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 COL21A1Q96P44 957 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 SMG9Q9H0W8 520 aaKnown RBP11.24□□□□□ -0.61
USP53-201ENST00000274030 WDR26Q9H7D7 661 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 HS3ST4Q9Y661 456 aa11.24□□□□□ -0.61
USP53-201ENST00000274030 CA12O43570 354 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 PRDX6P30041 224 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 CLCNKAP51800 687 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 CEBPGP53567 150 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 RAB25P57735 213 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 PTPRCAPQ14761 206 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 MTMR14Q8NCE2 650 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 NAT14Q8WUY8 206 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 DPYSL5Q9BPU6 564 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 TFB2MQ9H5Q4 396 aaKnown RBP11.23□□□□□ -0.61
USP53-201ENST00000274030 TXNRD2Q9NNW7 524 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 TRPV5Q9NQA5 729 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 ZDHHC18Q9NUE0 388 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 CDC7O00311 574 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 CBFA2T3O75081 653 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 IMPDH1P20839 514 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 PDHA2P29803 388 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms