RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 DGKEP52429 567 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 KCNJ2P63252 427 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 CDC16Q13042 620 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 KLF10Q13118 480 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 LRRC32Q14392 662 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 PTCHD3Q3KNS1 767 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 CHSY3Q70JA7 882 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 SYT13Q7L8C5 426 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 EFL1Q7Z2Z2 1120 aaKnown RBP16.44■□□□□ 0.22
CLN3-252ENST00000636907 MILR1Q7Z6M3 343 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 SYNPOQ8N3V7 929 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 CPSF7Q8N684 471 aaKnown RBP16.44■□□□□ 0.22
CLN3-252ENST00000636907 PYCR2Q96C36 320 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 CCDC138Q96M89 665 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 PKP4Q99569 1192 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 ATG10Q9H0Y0 220 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 AKTIPQ9H8T0 292 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 USP36Q9P275 1121 aaKnown RBP16.44■□□□□ 0.22
CLN3-252ENST00000636907 DNMT3AQ9Y6K1 912 aaPredicted RBP16.44■□□□□ 0.22
CLN3-252ENST00000636907 LRRC72A6NJI9 287 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 KMOO15229 486 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 CHEK2O96017 543 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 ACADLP28330 430 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 CCR3P51677 355 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 RPA4Q13156 261 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 FZD5Q13467 585 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 GAS6Q14393 721 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 UBXN2BQ14CS0 331 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 NAA25Q14CX7 972 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 RINLQ6ZS11 566 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 ADHFE1Q8IWW8 467 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 POU5F2Q8N7G0 328 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 SPDYE1Q8NFV5 336 aaPredicted RBP16.43■□□□□ 0.22
CLN3-252ENST00000636907 METTL6Q8TCB7 284 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 NTMT1Q9BV86 223 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 SGK2Q9HBY8 427 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 LTB4R2Q9NPC1 389 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 STOX2Q9P2F5 926 aaPredicted RBP16.43■□□□□ 0.22
CLN3-252ENST00000636907 GIMAP2Q9UG22 337 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 SLC17A4Q9Y2C5 497 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 COPG1Q9Y678 874 aaKnown RBP16.43■□□□□ 0.22
CLN3-252ENST00000636907 POM121BA6NF01 834 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 CFAP73A6NFT4 308 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 CACNB4O00305 520 aaPredicted RBP16.43■□□□□ 0.22
CLN3-252ENST00000636907 UBDO15205 165 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 CEACAM5P06731 702 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 NQO1P15559 274 aaKnown RBP16.43■□□□□ 0.22
CLN3-252ENST00000636907 CD1EP15812 388 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 ITPKAP23677 461 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 CLDN2P57739 230 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 ZP2Q05996 745 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 ANO7Q6IWH7 933 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 SCIMPQ6UWF3 145 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 SNX31Q8N9S9 440 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 FBXO15Q8NCQ5 510 aaPredicted RBP16.43■□□□□ 0.22
CLN3-252ENST00000636907 DENND6BQ8NEG7 585 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 ZDHHC5Q9C0B5 715 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 POLG2Q9UHN1 485 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 CA5BQ9Y2D0 317 aa16.43■□□□□ 0.22
CLN3-252ENST00000636907 SEMA4FO95754 770 aa16.42■□□□□ 0.22
CLN3-252ENST00000636907 EBLN1P0CF75 366 aa16.42■□□□□ 0.22
CLN3-252ENST00000636907 HGFP14210 728 aa16.42■□□□□ 0.22
CLN3-252ENST00000636907 PIK3R1P27986 724 aa16.42■□□□□ 0.22
CLN3-252ENST00000636907 IMPA1P29218 277 aa16.42■□□□□ 0.22
CLN3-252ENST00000636907 HTR6P50406 440 aa16.42■□□□□ 0.22
CLN3-252ENST00000636907 PFN3P60673 137 aa16.42■□□□□ 0.22
CLN3-252ENST00000636907 XKR7Q5GH72 579 aa16.42■□□□□ 0.22
CLN3-252ENST00000636907 METRNLQ641Q3 311 aa16.42■□□□□ 0.22
CLN3-252ENST00000636907 AGTRAPQ6RW13 159 aa16.42■□□□□ 0.22
CLN3-252ENST00000636907 CHST15Q7LFX5 561 aaPredicted RBP16.42■□□□□ 0.22
CLN3-252ENST00000636907 PDZD3Q86UT5 571 aa16.42■□□□□ 0.22
CLN3-252ENST00000636907 ATL1Q8WXF7 558 aa16.42■□□□□ 0.22
CLN3-252ENST00000636907 FOXQ1Q9C009 403 aa16.42■□□□□ 0.22
CLN3-252ENST00000636907 RMI1Q9H9A7 625 aa16.42■□□□□ 0.22
CLN3-252ENST00000636907 MRPL40Q9NQ50 206 aaKnown RBP16.42■□□□□ 0.22
CLN3-252ENST00000636907 DNAJC11Q9NVH1 559 aa16.42■□□□□ 0.22
CLN3-252ENST00000636907 WNT16Q9UBV4 365 aa16.42■□□□□ 0.22
CLN3-252ENST00000636907 TRPS1Q9UHF7 1281 aa16.42■□□□□ 0.22
CLN3-252ENST00000636907 FBXL21Q9UKT6 434 aa16.42■□□□□ 0.22
CLN3-252ENST00000636907 SLC22A14Q9Y267 594 aa16.42■□□□□ 0.22
CLN3-252ENST00000636907 MRPS17Q9Y2R5 130 aaKnown RBP16.42■□□□□ 0.22
CLN3-252ENST00000636907 RNF11Q9Y3C5 154 aa16.42■□□□□ 0.22
CLN3-252ENST00000636907 KANSL1LA0AUZ9 987 aa16.41■□□□□ 0.22
CLN3-252ENST00000636907 C10orf142B7Z368 130 aa16.41■□□□□ 0.22
CLN3-252ENST00000636907 H0YHG0 523 aa16.41■□□□□ 0.22
CLN3-252ENST00000636907 SLC22A2O15244 555 aa16.41■□□□□ 0.22
CLN3-252ENST00000636907 SLC16A8O95907 504 aa16.41■□□□□ 0.22
CLN3-252ENST00000636907 IGLV3-19P01714 112 aa16.41■□□□□ 0.22
CLN3-252ENST00000636907 ALDOCP09972 364 aaKnown RBP16.41■□□□□ 0.22
CLN3-252ENST00000636907 PRDX6P30041 224 aa16.41■□□□□ 0.22
CLN3-252ENST00000636907 HMOX2P30519 316 aa16.41■□□□□ 0.22
CLN3-252ENST00000636907 STARD6P59095 220 aa16.41■□□□□ 0.22
CLN3-252ENST00000636907 GRB7Q14451 532 aa16.41■□□□□ 0.22
CLN3-252ENST00000636907 HABP4Q5JVS0 413 aaKnown RBP16.41■□□□□ 0.22
CLN3-252ENST00000636907 OR2T11Q8NH01 316 aa16.41■□□□□ 0.22
CLN3-252ENST00000636907 FBXO27Q8NI29 283 aa16.41■□□□□ 0.22
CLN3-252ENST00000636907 TUBGCP3Q96CW5 907 aa16.41■□□□□ 0.22
CLN3-252ENST00000636907 CMTM5Q96DZ9 223 aa16.41■□□□□ 0.22
CLN3-252ENST00000636907 HHIPQ96QV1 700 aa16.41■□□□□ 0.22
CLN3-252ENST00000636907 MIPEPQ99797 713 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 150.2 ms