RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 TLE3Q04726 772 aa17.59■□□□□ 0.41
CLN3-239ENST00000628023 C19orf57Q0VDD7 668 aa17.59■□□□□ 0.41
CLN3-239ENST00000628023 ILF2Q12905 390 aaKnown RBP17.59■□□□□ 0.41
CLN3-239ENST00000628023 ACSBG2Q5FVE4 666 aa17.59■□□□□ 0.41
CLN3-239ENST00000628023 ARMC6Q6NXE6 501 aa17.59■□□□□ 0.41
CLN3-239ENST00000628023 TTC23LQ6PF05 361 aa17.59■□□□□ 0.41
CLN3-239ENST00000628023 UNC5DQ6UXZ4 953 aa17.59■□□□□ 0.41
CLN3-239ENST00000628023 ZC3HC1Q86WB0 502 aaKnown RBP17.59■□□□□ 0.41
CLN3-239ENST00000628023 OOSP2Q86WS3 158 aa17.59■□□□□ 0.41
CLN3-239ENST00000628023 RELL1Q8IUW5 271 aa17.59■□□□□ 0.41
CLN3-239ENST00000628023 GSPT2Q8IYD1 628 aaKnown RBP17.59■□□□□ 0.41
CLN3-239ENST00000628023 OR52E1Q8NGJ3 308 aa17.59■□□□□ 0.41
CLN3-239ENST00000628023 OR5K2Q8NHB8 316 aa17.59■□□□□ 0.41
CLN3-239ENST00000628023 GIMAP7Q8NHV1 300 aa17.59■□□□□ 0.41
CLN3-239ENST00000628023 CD200R1Q8TD46 325 aa17.59■□□□□ 0.41
CLN3-239ENST00000628023 SLC39A7Q92504 469 aa17.59■□□□□ 0.41
CLN3-239ENST00000628023 RSC1A1Q92681 617 aa17.59■□□□□ 0.41
CLN3-239ENST00000628023 SLC30A3Q99726 388 aa17.59■□□□□ 0.41
CLN3-239ENST00000628023 RHOJQ9H4E5 214 aa17.59■□□□□ 0.41
CLN3-239ENST00000628023 LATS2Q9NRM7 1088 aa17.59■□□□□ 0.41
CLN3-239ENST00000628023 KLHL42Q9P2K6 505 aa17.59■□□□□ 0.41
CLN3-239ENST00000628023 POLG2Q9UHN1 485 aa17.59■□□□□ 0.41
CLN3-239ENST00000628023 RUVBL2Q9Y230 463 aaKnown RBP17.59■□□□□ 0.41
CLN3-239ENST00000628023 DHRS7Q9Y394 339 aa17.59■□□□□ 0.41
CLN3-239ENST00000628023 FAM95CA0A1B0GW59 222 aa17.58■□□□□ 0.4
CLN3-239ENST00000628023 ENO3P13929 434 aaPredicted RBP17.58■□□□□ 0.4
CLN3-239ENST00000628023 MCM3P25205 808 aa17.58■□□□□ 0.4
CLN3-239ENST00000628023 MPSTP25325 297 aa17.58■□□□□ 0.4
CLN3-239ENST00000628023 GP5P40197 560 aa17.58■□□□□ 0.4
CLN3-239ENST00000628023 SKIV2L2P42285 1042 aaKnown RBP17.58■□□□□ 0.4
CLN3-239ENST00000628023 RGS4P49798 205 aa17.58■□□□□ 0.4
CLN3-239ENST00000628023 PDX1P52945 283 aa17.58■□□□□ 0.4
CLN3-239ENST00000628023 CDKN2DP55273 166 aa17.58■□□□□ 0.4
CLN3-239ENST00000628023 CXADRP78310 365 aa17.58■□□□□ 0.4
CLN3-239ENST00000628023 NAB1Q13506 487 aa17.58■□□□□ 0.4
CLN3-239ENST00000628023 EFTUD2Q15029 972 aaKnown RBP eCLIP17.58■□□□□ 0.43e-6■■■■□ 22
CLN3-239ENST00000628023 KLHL38Q2WGJ6 581 aa17.58■□□□□ 0.4
CLN3-239ENST00000628023 SNAP47Q5SQN1 464 aa17.58■□□□□ 0.4
CLN3-239ENST00000628023 IRGCQ6NXR0 463 aa17.58■□□□□ 0.4
CLN3-239ENST00000628023 WDR74Q6RFH5 385 aaPredicted RBP17.58■□□□□ 0.4
CLN3-239ENST00000628023 B3GNT8Q7Z7M8 397 aa17.58■□□□□ 0.4
CLN3-239ENST00000628023 PLXDC1Q8IUK5 500 aa17.58■□□□□ 0.4
CLN3-239ENST00000628023 DCUN1D3Q8IWE4 304 aa17.58■□□□□ 0.4
CLN3-239ENST00000628023 CPNE9Q8IYJ1 553 aa17.58■□□□□ 0.4
CLN3-239ENST00000628023 OR4E2Q8NGC2 313 aa17.58■□□□□ 0.4
CLN3-239ENST00000628023 OR4D9Q8NGE8 314 aa17.58■□□□□ 0.4
CLN3-239ENST00000628023 NAF1Q96HR8 494 aaKnown RBP17.58■□□□□ 0.4
CLN3-239ENST00000628023 VPS39Q96JC1 886 aa17.58■□□□□ 0.4
CLN3-239ENST00000628023 TGM7Q96PF1 710 aa17.58■□□□□ 0.4
CLN3-239ENST00000628023 SRMSQ9H3Y6 488 aa17.58■□□□□ 0.4
CLN3-239ENST00000628023 KLHL3Q9UH77 587 aa17.58■□□□□ 0.4
CLN3-239ENST00000628023 MED16Q9Y2X0 877 aa17.58■□□□□ 0.4
CLN3-239ENST00000628023 CBSLP0DN79 551 aa17.57■□□□□ 0.4
CLN3-239ENST00000628023 CBSP35520 551 aa17.57■□□□□ 0.4
CLN3-239ENST00000628023 SLC12A2P55011 1212 aa17.57■□□□□ 0.4
CLN3-239ENST00000628023 TMPRSS3P57727 454 aa17.57■□□□□ 0.4
CLN3-239ENST00000628023 PRKAA1Q13131 559 aa17.57■□□□□ 0.4
CLN3-239ENST00000628023 SQSTM1Q13501 440 aa17.57■□□□□ 0.4
CLN3-239ENST00000628023 GBX1Q14549 363 aa17.57■□□□□ 0.4
CLN3-239ENST00000628023 C3orf38Q5JPI3 329 aa17.57■□□□□ 0.4
CLN3-239ENST00000628023 TMEM71Q6P5X7 295 aa17.57■□□□□ 0.4
CLN3-239ENST00000628023 IGF2-ASQ6U949 168 aa17.57■□□□□ 0.4
CLN3-239ENST00000628023 TMPRSS9Q7Z410 1059 aa17.57■□□□□ 0.4
CLN3-239ENST00000628023 KCNE4Q8WWG9 221 aa17.57■□□□□ 0.4
CLN3-239ENST00000628023 MRRFQ96E11 262 aaKnown RBP17.57■□□□□ 0.4
CLN3-239ENST00000628023 CCDC74BQ96LY2 380 aa17.57■□□□□ 0.4
CLN3-239ENST00000628023 CYTH2Q99418 400 aa17.57■□□□□ 0.4
CLN3-239ENST00000628023 DPH1Q9BZG8 443 aa17.57■□□□□ 0.4
CLN3-239ENST00000628023 SEMA6CQ9H3T2 930 aa17.57■□□□□ 0.4
CLN3-239ENST00000628023 OGFRQ9NZT2 677 aa17.57■□□□□ 0.4
CLN3-239ENST00000628023 AKAP7Q9P0M2 348 aaPredicted RBP17.57■□□□□ 0.4
CLN3-239ENST00000628023 TMEM9Q9P0T7 183 aa17.57■□□□□ 0.4
CLN3-239ENST00000628023 PLAGL1Q9UM63 463 aa17.57■□□□□ 0.4
CLN3-239ENST00000628023 SATB2Q9UPW6 733 aa17.57■□□□□ 0.4
CLN3-239ENST00000628023 VWA7Q9Y334 891 aa17.57■□□□□ 0.4
CLN3-239ENST00000628023 ENTPD2Q9Y5L3 495 aa17.57■□□□□ 0.4
CLN3-239ENST00000628023 NFS1Q9Y697 457 aa17.57■□□□□ 0.4
CLN3-239ENST00000628023 IGHV5-10-1A0A0J9YXX1 117 aa17.56■□□□□ 0.4
CLN3-239ENST00000628023 OR6C74A6NCV1 312 aa17.56■□□□□ 0.4
CLN3-239ENST00000628023 OR5K3A6NET4 321 aa17.56■□□□□ 0.4
CLN3-239ENST00000628023 AGRPO00253 132 aa17.56■□□□□ 0.4
CLN3-239ENST00000628023 CAPN5O15484 640 aaPredicted RBP17.56■□□□□ 0.4
CLN3-239ENST00000628023 FDXRP22570 491 aa17.56■□□□□ 0.4
CLN3-239ENST00000628023 CCKBRP32239 447 aa17.56■□□□□ 0.4
CLN3-239ENST00000628023 CCNFP41002 786 aa17.56■□□□□ 0.4
CLN3-239ENST00000628023 BDKRB1P46663 353 aa17.56■□□□□ 0.4
CLN3-239ENST00000628023 GFERP55789 205 aa17.56■□□□□ 0.4
CLN3-239ENST00000628023 CFHR1Q03591 330 aa17.56■□□□□ 0.4
CLN3-239ENST00000628023 UAP1Q16222 522 aaPredicted RBP17.56■□□□□ 0.4
CLN3-239ENST00000628023 LRRC8EQ6NSJ5 796 aa17.56■□□□□ 0.4
CLN3-239ENST00000628023 FOXR1Q6PIV2 292 aa17.56■□□□□ 0.4
CLN3-239ENST00000628023 AMIGO1Q86WK6 493 aa17.56■□□□□ 0.4
CLN3-239ENST00000628023 SLITRK4Q8IW52 837 aa17.56■□□□□ 0.4
CLN3-239ENST00000628023 RAB42Q8N4Z0 105 aa17.56■□□□□ 0.4
CLN3-239ENST00000628023 EIF1ADQ8N9N8 165 aaKnown RBP17.56■□□□□ 0.4
CLN3-239ENST00000628023 MAGEC3Q8TD91 643 aa17.56■□□□□ 0.4
CLN3-239ENST00000628023 UBXN4Q92575 508 aa17.56■□□□□ 0.4
CLN3-239ENST00000628023 ZDHHC12Q96GR4 267 aa17.56■□□□□ 0.4
CLN3-239ENST00000628023 RBBP8Q99708 897 aa17.56■□□□□ 0.4
CLN3-239ENST00000628023 OLFM1Q99784 485 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms