RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 LRTM1Q9HBL6 345 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 MARK1Q9P0L2 795 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 PDE10AQ9Y233 779 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 CA5BQ9Y2D0 317 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 UBFD1O14562 309 aaKnown RBP15.37■□□□□ 0.05
CPSF1-213ENST00000620219 ME2P23368 584 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 CLCN7P51798 805 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 ZNF542PQ5EBM4 170 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 ARTNQ5T4W7 220 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 VRK3Q8IV63 474 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 SPDL1Q96EA4 605 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 PPM1MQ96MI6 270 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 CD244Q9BZW8 370 aa15.37■□□□□ 0.05
CPSF1-213ENST00000620219 LRRC72A6NJI9 287 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 NDUFS2O75306 463 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 RPN2P04844 631 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 GSNP06396 782 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 IDO1P14902 403 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 PTPN5P54829 565 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 DTD2Q96FN9 168 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 SLC32A1Q9H598 525 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 CYP8B1Q9UNU6 501 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 PATJQ8NI35 1801 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 CABIN1Q9Y6J0 2220 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 H7C0S8 307 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 TBX10O75333 385 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 ZNF821O75541 412 aaPredicted RBP15.36■□□□□ 0.05
CPSF1-213ENST00000620219 SNUPNO95149 360 aaKnown RBP15.36■□□□□ 0.05
CPSF1-213ENST00000620219 NTRK1P04629 796 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 IDSP22304 550 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 MMP12P39900 470 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 ACTR1BP42025 376 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 CLDN2P57739 230 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 ACTR1AP61163 376 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 ARMC3Q5W041 872 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 MACC1Q6ZN28 852 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 ANKRD46Q86W74 232 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 SLC44A2Q8IWA5 706 aaPredicted RBP15.36■□□□□ 0.05
CPSF1-213ENST00000620219 TMEM151AQ8N4L1 468 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 RASGEF1AQ8N9B8 481 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 C15orf41Q9Y2V0 281 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 URB1O60287 2271 aaKnown RBP15.36■□□□□ 0.05
CPSF1-213ENST00000620219 ANKDD1BA6NHY2 528 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 FADS2P1A8MWK0 482 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 RNGTTO60942 597 aaKnown RBP15.36■□□□□ 0.05
CPSF1-213ENST00000620219 ADH1BP00325 375 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 OPRD1P41143 372 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 PHEXP78562 749 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 RIPK1Q13546 671 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.36■□□□□ 0.05
CPSF1-213ENST00000620219 BHLHE22Q8NFJ8 381 aaPredicted RBP15.36■□□□□ 0.05
CPSF1-213ENST00000620219 PCTPQ9UKL6 214 aa15.36■□□□□ 0.05
CPSF1-213ENST00000620219 A0A1B0GTL3 188 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 TMEM202A6NGA9 273 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 CTHP32929 405 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 JPH3Q8WXH2 748 aaPredicted RBP15.35■□□□□ 0.05
CPSF1-213ENST00000620219 MRPL40Q9NQ50 206 aaKnown RBP15.35■□□□□ 0.05
CPSF1-213ENST00000620219 S100A3P33764 101 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 ERVPABLB-1P60509 514 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 SLC34A1Q06495 639 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 LRRC74BQ6ZQY2 392 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 FRS2Q8WU20 508 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 RLN3Q8WXF3 142 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 MRGPRX3Q96LB0 322 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 ATXN10Q9UBB4 475 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 NUP214P35658 2090 aaPredicted RBP15.35■□□□□ 0.05
CPSF1-213ENST00000620219 STX16O14662 325 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 CA5AP35218 305 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 TUBB3Q13509 450 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 CYP2A13Q16696 494 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 RAD51AP1Q96B01 352 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 TADA1Q96BN2 335 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 PCDHAC1Q9H158 963 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 XKR8Q9H6D3 395 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 TRIM39Q9HCM9 518 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 ASB1Q9Y576 335 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 A0A0G2JN53 185 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 RNF103-CHMP3A0A140T963 221 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 FPGTO14772 594 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 EGFP01133 1207 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 CISD3P0C7P0 127 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 GRK3P35626 688 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 IZUMO2Q6UXV1 221 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 ZNF621Q6ZSS3 439 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 CYP2U1Q7Z449 544 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 TSTD1Q8NFU3 115 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 FAM3CQ92520 227 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 ZNF514Q96K75 400 aaPredicted RBP15.35■□□□□ 0.05
CPSF1-213ENST00000620219 SEPHS2Q99611 448 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 RTKNQ9BST9 563 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 POLMQ9NP87 494 aaPredicted RBP15.35■□□□□ 0.05
CPSF1-213ENST00000620219 POMPQ9Y244 141 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 SLC27A6Q9Y2P4 619 aa15.35■□□□□ 0.05
CPSF1-213ENST00000620219 TARM1B6A8C7 271 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 FOSL2P15408 326 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 C5AR1P21730 350 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 VHLP40337 213 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 DGKQP52824 942 aa15.34■□□□□ 0.05
CPSF1-213ENST00000620219 SF1Q15637 639 aaKnown RBP15.34■□□□□ 0.05
CPSF1-213ENST00000620219 MAPKAPK3Q16644 382 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms