RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 LENG1Q96BZ8 264 aaPredicted RBP20.1■□□□□ 0.81
UPF1-207ENST00000599848 NTPCRQ9BSD7 190 aaKnown RBP20.1■□□□□ 0.81
UPF1-207ENST00000599848 HEXBP07686 556 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 ZNF37AP17032 561 aaPredicted RBP20.1■□□□□ 0.81
UPF1-207ENST00000599848 AHCYP23526 432 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 RPS15P62841 145 aaKnown RBP20.1■□□□□ 0.81
UPF1-207ENST00000599848 TAF5Q15542 800 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 IFI44LQ53G44 452 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 PYDC2Q56P42 97 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 CYP2U1Q7Z449 544 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 CYP2S1Q96SQ9 504 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 RIOK2Q9BVS4 552 aaKnown RBP20.1■□□□□ 0.81
UPF1-207ENST00000599848 ASPNQ9BXN1 380 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 CNTN3Q9P232 1028 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 ING4Q9UNL4 249 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 NFKBIEO00221 500 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 CASKO14936 926 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 PLA2G16P53816 162 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 C1orf216Q8TAB5 229 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 SLC44A1Q8WWI5 657 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 SDCBP2Q9H190 292 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 SEMA6AQ9H2E6 1030 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 PIGRP01833 764 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 RPS6KA3P51812 740 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 HSF2Q03933 536 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 LYARQ9NX58 379 aaKnown RBP20.1■□□□□ 0.81
UPF1-207ENST00000599848 TMPRSS11EQ9UL52 423 aa20.1■□□□□ 0.81
UPF1-207ENST00000599848 TCEA3O75764 348 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 PSMG1O95456 288 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 TSPAN8P19075 237 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 RPS21P63220 83 aaKnown RBP20.09■□□□□ 0.81
UPF1-207ENST00000599848 PPP2R2BQ00005 443 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 SP140Q13342 867 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 DPYSQ14117 519 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 TRPV1Q8NER1 839 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 ZNF184Q99676 751 aaPredicted RBP20.09■□□□□ 0.81
UPF1-207ENST00000599848 PNPLA3Q9NST1 481 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 GPR37L1O60883 481 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 LRCH4O75427 683 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 CACNA2D1P54289 1103 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 TEAD2Q15562 447 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 OXR1Q8N573 874 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 C2CD4BA6NLJ0 364 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 RPS9P46781 194 aaKnown RBP20.09■□□□□ 0.81
UPF1-207ENST00000599848 NCBP2P52298 156 aaKnown RBP eCLIP20.09■□□□□ 0.811e-7■■■□□ 15.4
UPF1-207ENST00000599848 PAMR1Q6UXH9 720 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 KCNJ9Q92806 393 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 ADAP2Q9NPF8 381 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 RSL24D1Q9UHA3 163 aaKnown RBP20.09■□□□□ 0.81
UPF1-207ENST00000599848 TEX13CA0A0J9YWL9 993 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 TSPAN6O43657 245 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 LRIF1Q5T3J3 769 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 TPRG1Q6ZUI0 275 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 CCDC36Q8IYA8 594 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 ZZZ3Q8IYH5 903 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 SLC34A3Q8N130 599 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 KREMEN1Q96MU8 473 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 ABCG8Q9H221 673 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 SPATA7Q9P0W8 599 aa20.09■□□□□ 0.81
UPF1-207ENST00000599848 AP5Z1O43299 807 aa20.08■□□□□ 0.81
UPF1-207ENST00000599848 PTPN18Q99952 460 aa20.08■□□□□ 0.81
UPF1-207ENST00000599848 PRODH2Q9UF12 536 aa20.08■□□□□ 0.81
UPF1-207ENST00000599848 KLRG2A4D1S0 409 aaPredicted RBP20.08■□□□□ 0.81
UPF1-207ENST00000599848 NPHS1O60500 1241 aa20.08■□□□□ 0.81
UPF1-207ENST00000599848 TRAPPC6AO75865 159 aa20.08■□□□□ 0.81
UPF1-207ENST00000599848 SDC2P34741 201 aa20.08■□□□□ 0.81
UPF1-207ENST00000599848 GSTM4Q03013 218 aa20.08■□□□□ 0.81
UPF1-207ENST00000599848 CHST4Q8NCG5 386 aa20.08■□□□□ 0.81
UPF1-207ENST00000599848 NCSTNQ92542 709 aa20.08■□□□□ 0.81
UPF1-207ENST00000599848 ACP6Q9NPH0 428 aa20.08■□□□□ 0.81
UPF1-207ENST00000599848 MCUBQ9NWR8 336 aa20.08■□□□□ 0.81
UPF1-207ENST00000599848 NME6O75414 186 aaPredicted RBP20.08■□□□□ 0.8
UPF1-207ENST00000599848 KAT7O95251 611 aa20.08■□□□□ 0.8
UPF1-207ENST00000599848 DLDP09622 509 aaKnown RBP20.08■□□□□ 0.8
UPF1-207ENST00000599848 TYRP14679 529 aa20.08■□□□□ 0.8
UPF1-207ENST00000599848 CCND3P30281 292 aaPredicted RBP20.08■□□□□ 0.8
UPF1-207ENST00000599848 CLCNKAP51800 687 aa20.08■□□□□ 0.8
UPF1-207ENST00000599848 RPL6Q02878 288 aaKnown RBP20.08■□□□□ 0.8
UPF1-207ENST00000599848 FRMD6Q96NE9 622 aa20.08■□□□□ 0.8
UPF1-207ENST00000599848 AGAP2Q99490 1192 aa20.08■□□□□ 0.8
UPF1-207ENST00000599848 SLC30A4O14863 429 aa20.08■□□□□ 0.8
UPF1-207ENST00000599848 NUDT1P36639 197 aa20.08■□□□□ 0.8
UPF1-207ENST00000599848 DCUN1D3Q8IWE4 304 aa20.08■□□□□ 0.8
UPF1-207ENST00000599848 RCN3Q96D15 328 aa20.08■□□□□ 0.8
UPF1-207ENST00000599848 NSUN3Q9H649 340 aaKnown RBP20.08■□□□□ 0.8
UPF1-207ENST00000599848 COL1A1P02452 1464 aaPredicted RBP20.08■□□□□ 0.8
UPF1-207ENST00000599848 C2orf74A8MZ97 194 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 FADS2O95864 444 aaKnown RBP20.07■□□□□ 0.8
UPF1-207ENST00000599848 DHFRP00374 187 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 CD63P08962 238 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 SLC10A3P09131 477 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 NFATC2Q13469 925 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 ARSHQ5FYA8 562 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 CHRDL2Q6WN34 429 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 KCTD8Q6ZWB6 473 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 ZNF567Q8N184 647 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 ADAMTS18Q8TE60 1221 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 NOL6Q9H6R4 1146 aaKnown RBP20.07■□□□□ 0.8
UPF1-207ENST00000599848 IFT46Q9NQC8 304 aa20.07■□□□□ 0.8
UPF1-207ENST00000599848 MATN2O00339 956 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms