RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 SPATA7Q9P0W8 599 aa16.1■□□□□ 0.17
SHKBP1-219ENST00000599575 NOVA2Q9UNW9 492 aaKnown RBP16.1■□□□□ 0.17
SHKBP1-219ENST00000599575 CLCA2Q9UQC9 943 aa16.1■□□□□ 0.17
SHKBP1-219ENST00000599575 PIKFYVEQ9Y2I7 2098 aa16.1■□□□□ 0.17
SHKBP1-219ENST00000599575 DCHS1Q96JQ0 3298 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 OR5K3A6NET4 321 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 TSPAN12O95859 305 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 MT-CO3P00414 261 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 NUDT17P0C025 328 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 CYP2A7P20853 494 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 SAT1P21673 171 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 CCKBRP32239 447 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 SERPINB8P50452 374 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 ATP6V0D1P61421 351 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 PRKAA1Q13131 559 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 EFTUD2Q15029 972 aaKnown RBP eCLIP16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 UAP1Q16222 522 aaPredicted RBP16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 CCDC157Q569K6 752 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 DUS1LQ6P1R4 473 aaKnown RBP16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 TDRPQ86YL5 185 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 CFAP61Q8NHU2 1237 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 HMGCLL1Q8TB92 370 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 MCOLN3Q8TDD5 553 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 ISL2Q96A47 359 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 SLC22A18Q96BI1 424 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 LINGO1Q96FE5 620 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 HGH1Q9BTY7 390 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 TBC1D10AQ9BXI6 508 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 TRIM54Q9BYV2 358 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 DERL2Q9GZP9 239 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 TWSG1Q9GZX9 223 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 RRAGDQ9NQL2 400 aaPredicted RBP16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 LNPEPQ9UIQ6 1025 aa16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 MN1Q10571 1320 aaPredicted RBP16.09■□□□□ 0.17
SHKBP1-219ENST00000599575 IQANK1A0A1B0GTG1 560 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 CCDC151A5D8V7 595 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 PABPN1LA6NDY0 278 aaKnown RBP16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 POC1B-GALNT4F8VUJ3 575 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 MYO1CO00159 1063 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 RASGRF2O14827 1237 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 FKBP9O95302 570 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 WISP3O95389 354 aaPredicted RBP16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 SNRPAP09012 282 aaKnown RBP16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 HIST1H2AGP0C0S8 130 aaPredicted RBP16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 HIST1H2ADP20671 130 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 KCNA4P22459 653 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 HSD17B3P37058 310 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 AP1S2P56377 157 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 ZFP36L1Q07352 338 aaKnown RBP16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 PRKG2Q13237 762 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 EIF3IQ13347 325 aaKnown RBP16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 AMZ1Q400G9 498 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 MROH9Q5TGP6 573 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 HES3Q5TGS1 186 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 ARMC6Q6NXE6 501 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 CEP97Q8IW35 865 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 DCAKDQ8WVC6 231 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 NCSTNQ92542 709 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 HIST1H2AHQ96KK5 128 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 UBXN10Q96LJ8 280 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 HIST1H2AJQ99878 128 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 H2AFJQ9BTM1 129 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 STRADBQ9C0K7 418 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 PARVBQ9HBI1 364 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 HRASLS2Q9NWW9 162 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 PSMC3IPQ9P2W1 217 aaPredicted RBP16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 TLK1Q9UKI8 766 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 TDRKHQ9Y2W6 561 aaKnown RBP16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 ACOT9Q9Y305 439 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 NFS1Q9Y697 457 aa16.08■□□□□ 0.16
SHKBP1-219ENST00000599575 A0A087X1B8 175 aa16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 HGSO14964 777 aaPredicted RBP16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 FAM155BO75949 473 aa16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 C9P02748 559 aa16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 ADRB1P08588 477 aa16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 ANKRD34CP0C6C1 535 aa16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 JUPP14923 745 aa16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 CSRP3P50461 194 aa16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 KIR2DS3Q14952 304 aa16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 ISXQ2M1V0 245 aa16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 TAF1BQ53T94 588 aaPredicted RBP16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 UBAP2Q5T6F2 1119 aaKnown RBP16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 ANKS6Q68DC2 871 aa16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 TIFABQ6ZNK6 161 aa16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 RAPH1Q70E73 1250 aa16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 UBE2R2Q712K3 238 aaPredicted RBP16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 PIWIL4Q7Z3Z4 852 aaKnown RBP16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 ADAMTSL2Q86TH1 951 aa16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 TBC1D1Q86TI0 1168 aaPredicted RBP16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 LCA5Q86VQ0 697 aa16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 ZNF761Q86XN6 746 aaPredicted RBP16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 SLITRK4Q8IW52 837 aa16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 OR4E2Q8NGC2 313 aa16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 OR9A1PQ8NGU1 263 aa16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 OR2L8Q8NGY9 312 aa16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 CABS1Q96KC9 395 aa16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 CCDC138Q96M89 665 aa16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 ROPN1BQ9BZX4 212 aaPredicted RBP16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 ROPN1Q9HAT0 212 aaPredicted RBP16.07■□□□□ 0.16
SHKBP1-219ENST00000599575 OGFRQ9NZT2 677 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms