RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 PCDHB11Q9Y5F2 797 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 K7ENP7 123 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 NDC80O14777 642 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 POLR1CO15160 346 aaPredicted RBP15.64■□□□□ 0.09
TRIM28-213ENST00000598355 RAD51CO43502 376 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 ZBTB11O95625 1053 aaPredicted RBP15.64■□□□□ 0.09
TRIM28-213ENST00000598355 PKLRP30613 574 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 FMO4P31512 558 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 CLCN7P51798 805 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 CSE1LP55060 971 aaKnown RBP15.64■□□□□ 0.09
TRIM28-213ENST00000598355 C2orf54Q08AI8 447 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 PRKAA1Q13131 559 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 CTBP1Q13363 440 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 THOC5Q13769 683 aaKnown RBP15.64■□□□□ 0.09
TRIM28-213ENST00000598355 MAP7Q14244 749 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 KYNUQ16719 465 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 BBS9Q3SYG4 887 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 BROXQ5VW32 411 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 ZNF549Q6P9A3 640 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 INO80CQ6PI98 192 aaPredicted RBP15.64■□□□□ 0.09
TRIM28-213ENST00000598355 OTOAQ7RTW8 1153 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 RASGRP3Q8IV61 690 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 C2CD4AQ8NCU7 369 aaPredicted RBP15.64■□□□□ 0.09
TRIM28-213ENST00000598355 GIMAP7Q8NHV1 300 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 KCNJ9Q92806 393 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 NKD1Q969G9 470 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 PPM1MQ96MI6 270 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 PWWP2AQ96N64 755 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 ERP44Q9BS26 406 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 FBXO6Q9NRD1 293 aaPredicted RBP15.64■□□□□ 0.09
TRIM28-213ENST00000598355 COMMD10Q9Y6G5 202 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 ANKRD12Q6UB98 2062 aa15.64■□□□□ 0.09
TRIM28-213ENST00000598355 C2orf74A8MZ97 194 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 EFSO43281 561 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 MATN4O95460 622 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 RPN2P04844 631 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 FOLR1P15328 257 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 PRDX3P30048 256 aaKnown RBP15.63■□□□□ 0.09
TRIM28-213ENST00000598355 PEBP1P30086 187 aaKnown RBP15.63■□□□□ 0.09
TRIM28-213ENST00000598355 ELK3P41970 407 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 ARL4CP56559 192 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 HSD11B2P80365 405 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.63■□□□□ 0.09
TRIM28-213ENST00000598355 HSP90AA5PQ58FG0 334 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 DUPD1Q68J44 220 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 ARMC6Q6NXE6 501 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 CYB5D1Q6P9G0 228 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 UNC5AQ6ZN44 842 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 KIAA0408Q6ZU52 694 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 MAATS1Q7Z4T9 603 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 CERS2Q96G23 380 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 C16orf45Q96MC5 204 aaPredicted RBP15.63■□□□□ 0.09
TRIM28-213ENST00000598355 FCRL4Q96PJ5 515 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 OR6C1Q96RD1 312 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 CCNL2Q96S94 520 aaPredicted RBP15.63■□□□□ 0.09
TRIM28-213ENST00000598355 CTRCQ99895 268 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 XKR8Q9H6D3 395 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 ACTR10Q9NZ32 417 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 GRHL1Q9NZI5 618 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 WHRNQ9P202 907 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 GALPQ9UBC7 116 aa15.63■□□□□ 0.09
TRIM28-213ENST00000598355 KDM1AO60341 852 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 STK17BO94768 372 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 C1orf105O95561 183 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 F7P08709 466 aaPredicted RBP15.62■□□□□ 0.09
TRIM28-213ENST00000598355 CHRM5P08912 532 aaPredicted RBP15.62■□□□□ 0.09
TRIM28-213ENST00000598355 GABRB3P28472 473 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 RAB28P51157 221 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 MPP1Q00013 466 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 ACY1Q03154 408 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 VAC14Q08AM6 782 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 SRSF6Q13247 344 aaKnown RBP15.62■□□□□ 0.09
TRIM28-213ENST00000598355 TUBB3Q13509 450 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 SPESP1Q6UW49 350 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 NEK10Q6ZWH5 1172 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 TIPARPQ7Z3E1 657 aaKnown RBP15.62■□□□□ 0.09
TRIM28-213ENST00000598355 BPHLQ86WA6 291 aaPredicted RBP15.62■□□□□ 0.09
TRIM28-213ENST00000598355 ZBTB2Q8N680 514 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 LINC01555Q8NAE3 123 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 SIDT2Q8NBJ9 832 aaKnown RBP15.62■□□□□ 0.09
TRIM28-213ENST00000598355 BBOF1Q8ND07 529 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 HMGCLL1Q8TB92 370 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 OR2A14Q96R47 310 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 SLC30A3Q99726 388 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 AARSD1Q9BTE6 412 aaKnown RBP15.62■□□□□ 0.09
TRIM28-213ENST00000598355 TRIM31Q9BZY9 425 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 PHACTR1Q9C0D0 580 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 CHRNA10Q9GZZ6 450 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 CPNE5Q9HCH3 593 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 CDC23Q9UJX2 597 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 CHMP2BQ9UQN3 213 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 SNX24Q9Y343 169 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 MRFAP1Q9Y605 127 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 NFS1Q9Y697 457 aa15.62■□□□□ 0.09
TRIM28-213ENST00000598355 PIPSLA2A3N6 862 aa15.61■□□□□ 0.09
TRIM28-213ENST00000598355 GSAPA4D1B5 854 aa15.61■□□□□ 0.09
TRIM28-213ENST00000598355 RAD1O60671 282 aa15.61■□□□□ 0.09
TRIM28-213ENST00000598355 EBLN1P0CF75 366 aa15.61■□□□□ 0.09
TRIM28-213ENST00000598355 ERVK-10P10266 1014 aa15.61■□□□□ 0.09
TRIM28-213ENST00000598355 ERGP11308 486 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms