RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	SHANK1	Q9Y566	2161 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	TCRBV7S2A1N4T	A0A589	114 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	CCDC162P	A2VCL2	907 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	BHMG1	C9JSJ3	638 aa	Predicted RBP	10.17	□□□□□ -0.78
LSM4-205	ENST00000597776		H3BMH7	237 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	MASP2	O00187	686 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	DPM1	O60762	260 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	KLF7	O75840	302 aa	Predicted RBP	10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	OR2B3	O76000	313 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	AP2A2	O94973	939 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	IPO7	O95373	1038 aa	Known RBP	10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	AP2A1	O95782	977 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	PTMA	P06454	111 aa	Known RBP	10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	CHRM5	P08912	532 aa	Predicted RBP	10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	AGXT	P21549	392 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	MSN	P26038	577 aa	Known RBP	10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	ACADL	P28330	430 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	SHMT2	P34897	504 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	GABRA4	P48169	554 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	CSE1L	P55060	971 aa	Known RBP	10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	MRPL49	Q13405	166 aa	Known RBP	10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	SLC9A5	Q14940	896 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	KYNU	Q16719	465 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	C4orf17	Q53FE4	359 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	MLIP	Q5VWP3	458 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	MED25	Q71SY5	747 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	MRGPRE	Q86SM8	312 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	RAB43	Q86YS6	212 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	FAM20C	Q8IXL6	584 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	GPR135	Q8IZ08	494 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	TMEM102	Q8N9M5	508 aa	Predicted RBP	10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	GLIS1	Q8NBF1	620 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	FLVCR1-AS1	Q8TAF5	88 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	N4BP2L2	Q92802	583 aa	Predicted RBP	10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	OR2A14	Q96R47	310 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	PANX2	Q96RD6	677 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	DPH2	Q9BQC3	489 aa	Predicted RBP	10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	TMEM121	Q9BTD3	319 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	SLAMF7	Q9NQ25	335 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	IMPACT	Q9P2X3	320 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	DHCR7	Q9UBM7	475 aa	Known RBP	10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	G3BP2	Q9UN86	482 aa	Known RBP	10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	CDYL	Q9Y232	598 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	PADI2	Q9Y2J8	665 aa		10.17	□□□□□ -0.78
LSM4-205	ENST00000597776	PTRH2	Q9Y3E5	179 aa	Known RBP	10.17	□□□□□ -0.78
LSM4-205	ENST00000597776		A0A0J9YY10	115 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776		A0A0U1RQJ8	604 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	SLC5A10	A0PJK1	596 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	MROH6	A6NGR9	719 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	BTNL10	A8MVZ5	291 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	TCP11X1	B4DZS4	312 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	LIN7A	O14910	233 aa	Predicted RBP	10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	ZSCAN9	O15535	394 aa	Predicted RBP	10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	KRT86	O43790	486 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	OR1I1	O60431	355 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	CNOT3	O75175	753 aa	Known RBP	10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	FTCD	O95954	541 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	FTH1	P02794	183 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	HBQ1	P09105	142 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	GSTM1	P09488	218 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	PEBP1	P30086	187 aa	Known RBP	10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	FOXN2	P32314	431 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	NSG1	P42857	185 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	ZNF75D	P51815	510 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	RRAD	P55042	308 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	GSTM4	Q03013	218 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	KLF1	Q13351	362 aa	Predicted RBP	10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	SYTL3	Q4VX76	610 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	PACS1	Q6VY07	963 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	PEX26	Q7Z412	305 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	TMTC1	Q8IUR5	882 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	ZNF655	Q8N720	491 aa	Predicted RBP	10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	LMNTD1	Q8N9Z9	388 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	OR52K1	Q8NGK4	314 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	SLC35B2	Q8TB61	432 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	ATG4A	Q8WYN0	398 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	C19orf60	Q96EN9	201 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	TCTN2	Q96GX1	697 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	SGSM3	Q96HU1	749 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	CALR3	Q96L12	384 aa	Known RBP	10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	GBP5	Q96PP8	586 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	ALS2CR12	Q96Q35	445 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	SMAD5	Q99717	465 aa	Known RBP	10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	CASS4	Q9NQ75	786 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	IRAK4	Q9NWZ3	460 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	IFT80	Q9P2H3	777 aa	Predicted RBP	10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	PLEKHB1	Q9UF11	243 aa	Predicted RBP	10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	SLC2A6	Q9UGQ3	507 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	CIDEB	Q9UHD4	219 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	AMFR	Q9UKV5	643 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	KLHL20	Q9Y2M5	609 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	PCDHGB7	Q9Y5F8	929 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	SPTBN1	Q01082	2364 aa	Known RBP	10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	FER1L5	A0AVI2	2057 aa		10.16	□□□□□ -0.78
LSM4-205	ENST00000597776	RP1L1	Q8IWN7	2480 aa	Predicted RBP	10.15	□□□□□ -0.78
LSM4-205	ENST00000597776		A1L4Q6	167 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	GOLGA6L9	A6NEM1	432 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	ISM1	B1AKI9	464 aa		10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	ZNF189	O75820	626 aa	Predicted RBP	10.15	□□□□□ -0.78
LSM4-205	ENST00000597776	PSMA3	P25788	255 aa		10.15	□□□□□ -0.78

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