RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 KYNUQ16719 465 aa14.38□□□□□ -0.11
SS18-212ENST00000579061 CRTC2Q53ET0 693 aaPredicted RBP14.38□□□□□ -0.11
SS18-212ENST00000579061 CTSL3PQ5NE16 218 aa14.38□□□□□ -0.11
SS18-212ENST00000579061 RNASEH2BQ5TBB1 312 aaKnown RBP14.38□□□□□ -0.11
SS18-212ENST00000579061 NEPROQ6NW34 567 aa14.38□□□□□ -0.11
SS18-212ENST00000579061 SPESP1Q6UW49 350 aa14.38□□□□□ -0.11
SS18-212ENST00000579061 UNC5AQ6ZN44 842 aa14.38□□□□□ -0.11
SS18-212ENST00000579061 SYDE1Q6ZW31 735 aaPredicted RBP14.38□□□□□ -0.11
SS18-212ENST00000579061 HOOK3Q86VS8 718 aa14.38□□□□□ -0.11
SS18-212ENST00000579061 CREG2Q8IUH2 290 aa14.38□□□□□ -0.11
SS18-212ENST00000579061 CILP2Q8IUL8 1156 aa14.38□□□□□ -0.11
SS18-212ENST00000579061 VRK3Q8IV63 474 aa14.38□□□□□ -0.11
SS18-212ENST00000579061 ZNF669Q96BR6 464 aaPredicted RBP14.38□□□□□ -0.11
SS18-212ENST00000579061 ZNF501Q96CX3 271 aaPredicted RBP14.38□□□□□ -0.11
SS18-212ENST00000579061 STAMBPL1Q96FJ0 436 aa14.38□□□□□ -0.11
SS18-212ENST00000579061 SIGLEC10Q96LC7 697 aa14.38□□□□□ -0.11
SS18-212ENST00000579061 PPM1MQ96MI6 270 aa14.38□□□□□ -0.11
SS18-212ENST00000579061 BIRC8Q96P09 236 aa14.38□□□□□ -0.11
SS18-212ENST00000579061 CHRNA10Q9GZZ6 450 aa14.38□□□□□ -0.11
SS18-212ENST00000579061 XKR8Q9H6D3 395 aa14.38□□□□□ -0.11
SS18-212ENST00000579061 KCND1Q9NSA2 647 aa14.38□□□□□ -0.11
SS18-212ENST00000579061 INTS10Q9NVR2 710 aaKnown RBP14.38□□□□□ -0.11
SS18-212ENST00000579061 SOHLH2Q9NX45 425 aa14.38□□□□□ -0.11
SS18-212ENST00000579061 ACTR10Q9NZ32 417 aa14.38□□□□□ -0.11
SS18-212ENST00000579061 RNF14Q9UBS8 474 aa14.38□□□□□ -0.11
SS18-212ENST00000579061 LNPEPQ9UIQ6 1025 aa14.38□□□□□ -0.11
SS18-212ENST00000579061 RPS6KL1Q9Y6S9 549 aa14.38□□□□□ -0.11
SS18-212ENST00000579061 SMG1Q96Q15 3661 aaKnown RBP14.38□□□□□ -0.11
SS18-212ENST00000579061 KALRNO60229 2985 aa14.37□□□□□ -0.11
SS18-212ENST00000579061 ATRXP46100 2492 aa14.37□□□□□ -0.11
SS18-212ENST00000579061 ZCWPW2A0A1B0GU75 182 aa14.37□□□□□ -0.11
SS18-212ENST00000579061 CTAGE9A4FU28 777 aa14.37□□□□□ -0.11
SS18-212ENST00000579061 SLC9B1P1A6NJY1 282 aa14.37□□□□□ -0.11
SS18-212ENST00000579061 GOLGA8KD6RF30 607 aa14.37□□□□□ -0.11
SS18-212ENST00000579061 GOLGA8TH3BQL2 631 aa14.37□□□□□ -0.11
SS18-212ENST00000579061 CHRM5P08912 532 aaPredicted RBP14.37□□□□□ -0.11
SS18-212ENST00000579061 PTGIRP43119 386 aa14.37□□□□□ -0.11
SS18-212ENST00000579061 MC1RQ01726 317 aa14.37□□□□□ -0.11
SS18-212ENST00000579061 PWWP2BQ6NUJ5 590 aa14.37□□□□□ -0.11
SS18-212ENST00000579061 CENPUQ71F23 418 aa14.37□□□□□ -0.11
SS18-212ENST00000579061 OTOAQ7RTW8 1153 aa14.37□□□□□ -0.11
SS18-212ENST00000579061 DCUN1D3Q8IWE4 304 aa14.37□□□□□ -0.11
SS18-212ENST00000579061 GALNT6Q8NCL4 622 aa14.37□□□□□ -0.11
SS18-212ENST00000579061 GSDMBQ8TAX9 411 aa14.37□□□□□ -0.11
SS18-212ENST00000579061 CALML6Q8TD86 181 aa14.37□□□□□ -0.11
SS18-212ENST00000579061 ELMO2Q96JJ3 720 aa14.37□□□□□ -0.11
SS18-212ENST00000579061 TRAPPC9Q96Q05 1148 aa14.37□□□□□ -0.11
SS18-212ENST00000579061 NRTNQ99748 197 aa14.37□□□□□ -0.11
SS18-212ENST00000579061 FANCEQ9HB96 536 aa14.37□□□□□ -0.11
SS18-212ENST00000579061 ASIC3Q9UHC3 531 aa14.37□□□□□ -0.11
SS18-212ENST00000579061 PADI1Q9ULC6 663 aa14.37□□□□□ -0.11
SS18-212ENST00000579061 TDRKHQ9Y2W6 561 aaKnown RBP14.37□□□□□ -0.11
SS18-212ENST00000579061 PCM1Q15154 2024 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 CCDC188H7C350 402 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 SMAPO00193 183 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 TIAF1O95411 115 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 CCNYL3P0C7X3 344 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 PKMP14618 531 aaKnown RBP14.36□□□□□ -0.11
SS18-212ENST00000579061 ST6GAL1P15907 406 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 ATP5DP30049 168 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 PKLRP30613 574 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 FMO4P31512 558 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 PAFAH1B1P43034 410 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 RAB28P51157 221 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 ABRQ12979 859 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 THOC5Q13769 683 aaKnown RBP14.36□□□□□ -0.11
SS18-212ENST00000579061 GBX1Q14549 363 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 KIR2DS3Q14952 304 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 LONRF1Q17RB8 773 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 TTC23LQ6PF05 361 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 FBXO38Q6PIJ6 1188 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 CAPZA3Q96KX2 299 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 CATSPER2Q96P56 530 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 OR2A14Q96R47 310 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 NAT9Q9BTE0 207 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 MENTQ9BUN1 341 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 RAB11FIP5Q9BXF6 653 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 FAM117AQ9C073 453 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 LHX9Q9NQ69 397 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 PCDHB3Q9Y5E6 796 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 MAD1L1Q9Y6D9 718 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 FAM169AQ9Y6X4 670 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 PIEZO2Q9H5I5 2752 aa14.36□□□□□ -0.11
SS18-212ENST00000579061 TERTO14746 1132 aaKnown RBP14.35□□□□□ -0.11
SS18-212ENST00000579061 CPNE3O75131 537 aaKnown RBP14.35□□□□□ -0.11
SS18-212ENST00000579061 TTC4O95801 387 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 S1PR4O95977 384 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 RECKO95980 971 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 UGT2B7P16662 529 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 IVDP26440 423 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 CCNFP41002 786 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 GPR19Q15760 415 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 SLC5A12Q1EHB4 618 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 LINC00303Q3SY05 128 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 ZNF470Q6ECI4 717 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 TMEM126BQ8IUX1 230 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 UNC5BQ8IZJ1 945 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 AGGF1Q8N302 714 aaeCLIP14.35□□□□□ -0.11
SS18-212ENST00000579061 CFAP61Q8NHU2 1237 aa14.35□□□□□ -0.11
SS18-212ENST00000579061 FLVCR1-AS1Q8TAF5 88 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms