RNA–Protein interactions for RNA: ENST00000577779.1

PPP4R1-206, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 2

Gene PPP4R1, Length 481 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-206	ENST00000577779	MSH3	P20585	1137 aa		13.55	□□□□□ -0.24
PPP4R1-206	ENST00000577779	SOX11	P35716	441 aa		13.55	□□□□□ -0.24
PPP4R1-206	ENST00000577779	PAFAH1B3	Q15102	231 aa	Known RBP	13.55	□□□□□ -0.24
PPP4R1-206	ENST00000577779	ZIC1	Q15915	447 aa		13.55	□□□□□ -0.24
PPP4R1-206	ENST00000577779	SLC5A12	Q1EHB4	618 aa		13.55	□□□□□ -0.24
PPP4R1-206	ENST00000577779	CCDC70	Q6NSX1	233 aa		13.55	□□□□□ -0.24
PPP4R1-206	ENST00000577779	FAM151B	Q6UXP7	276 aa		13.55	□□□□□ -0.24
PPP4R1-206	ENST00000577779	NCCRP1	Q6ZVX7	275 aa	Predicted RBP	13.55	□□□□□ -0.24
PPP4R1-206	ENST00000577779	AMIGO1	Q86WK6	493 aa		13.55	□□□□□ -0.24
PPP4R1-206	ENST00000577779	KBTBD2	Q8IY47	623 aa		13.55	□□□□□ -0.24
PPP4R1-206	ENST00000577779	ADGRF3	Q8IZF5	1079 aa		13.55	□□□□□ -0.24
PPP4R1-206	ENST00000577779	CCNY	Q8ND76	341 aa		13.55	□□□□□ -0.24
PPP4R1-206	ENST00000577779	NEK11	Q8NG66	645 aa		13.55	□□□□□ -0.24
PPP4R1-206	ENST00000577779	SUN3	Q8TAQ9	357 aa		13.55	□□□□□ -0.24
PPP4R1-206	ENST00000577779	CA5BP1	Q8WTZ4	195 aa		13.55	□□□□□ -0.24
PPP4R1-206	ENST00000577779	NRGN	Q92686	78 aa		13.55	□□□□□ -0.24
PPP4R1-206	ENST00000577779	DLG3	Q92796	817 aa		13.55	□□□□□ -0.24
PPP4R1-206	ENST00000577779	SRPK1	Q96SB4	655 aa	Known RBP	13.55	□□□□□ -0.24
PPP4R1-206	ENST00000577779	TFB2M	Q9H5Q4	396 aa	Known RBP	13.55	□□□□□ -0.24
PPP4R1-206	ENST00000577779	XKR8	Q9H6D3	395 aa		13.55	□□□□□ -0.24
PPP4R1-206	ENST00000577779	CBX8	Q9HC52	389 aa		13.55	□□□□□ -0.24
PPP4R1-206	ENST00000577779	SCIN	Q9Y6U3	715 aa		13.55	□□□□□ -0.24
PPP4R1-206	ENST00000577779	FBN1	P35555	2871 aa	Known RBP	13.55	□□□□□ -0.24
PPP4R1-206	ENST00000577779	MXRA5	Q9NR99	2828 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	GADD45B	O75293	160 aa	Predicted RBP	13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	WISP2	O76076	250 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	CD48	P09326	243 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	PYGM	P11217	842 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	ITGAX	P20702	1163 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	HMGCL	P35914	325 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	SPAM1	P38567	509 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	PMP22	Q01453	160 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	LTB	Q06643	244 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	FOXD4	Q12950	439 aa	Predicted RBP	13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	CCDC183	Q5T5S1	534 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	ZDHHC20	Q5W0Z9	365 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	SARM1	Q6SZW1	724 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	TTLL10	Q6ZVT0	673 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	DAAM2	Q86T65	1068 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	NT5DC3	Q86UY8	548 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	CFAP206	Q8IYR0	622 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	LILRA3	Q8N6C8	439 aa	Predicted RBP	13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	SIRT6	Q8N6T7	355 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	CNTD1	Q8N815	330 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	OR52E1	Q8NGJ3	308 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	DTX3L	Q8TDB6	740 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	BRIX1	Q8TDN6	353 aa	Known RBP	13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	NAT14	Q8WUY8	206 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	MESP1	Q9BRJ9	268 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	CCM2	Q9BSQ5	444 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	CHRNA10	Q9GZZ6	450 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	SLC26A1	Q9H2B4	701 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	FANCL	Q9NW38	375 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	NXT1	Q9UKK6	140 aa	Known RBP	13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	ZNF835	Q9Y2P0	537 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	RTTN	Q86VV8	2226 aa		13.54	□□□□□ -0.24
PPP4R1-206	ENST00000577779	GLYATL1P3	A0A0U1RQE8	302 aa		13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779		A0A1B0GX78	115 aa		13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779	PRAMEF2	O60811	474 aa		13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779	TPM2	P07951	284 aa		13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779	CCDC172	P0C7W6	258 aa		13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779	ACPP	P15309	386 aa		13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779	FOSL1	P15407	271 aa		13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779	FER	P16591	822 aa		13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779	UGT2B7	P16662	529 aa		13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779	MX2	P20592	715 aa		13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779	ZBTB17	Q13105	803 aa		13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779	ITGA9	Q13797	1035 aa		13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779	FAM182A	Q5T1J6	154 aa		13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779		Q6ZPB1	254 aa	Predicted RBP	13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779	SPPL2C	Q8IUH8	684 aa		13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779	PSMF1	Q92530	271 aa		13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779	IMP4	Q96G21	291 aa	Known RBP	13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779	MDFI	Q99750	246 aa		13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779	DLL4	Q9NR61	685 aa		13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779	CCM2L	Q9NUG4	571 aa	Predicted RBP	13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779	MYO1A	Q9UBC5	1043 aa		13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779	CTSF	Q9UBX1	484 aa		13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779	PLCL2	Q9UPR0	1127 aa		13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779	RPH3A	Q9Y2J0	694 aa	Predicted RBP	13.53	□□□□□ -0.24
PPP4R1-206	ENST00000577779	FOXO6	A8MYZ6	492 aa		13.52	□□□□□ -0.25
PPP4R1-206	ENST00000577779	MAP2K7	O14733	419 aa		13.52	□□□□□ -0.25
PPP4R1-206	ENST00000577779	PRAMEF1	O95521	474 aa		13.52	□□□□□ -0.25
PPP4R1-206	ENST00000577779	NDST3	O95803	873 aa		13.52	□□□□□ -0.25
PPP4R1-206	ENST00000577779	WDPCP	O95876	746 aa		13.52	□□□□□ -0.25
PPP4R1-206	ENST00000577779	FTL	P02792	175 aa	Predicted RBP	13.52	□□□□□ -0.25
PPP4R1-206	ENST00000577779	PRR35	P0CG20	571 aa		13.52	□□□□□ -0.25
PPP4R1-206	ENST00000577779	MYBL2	P10244	700 aa		13.52	□□□□□ -0.25
PPP4R1-206	ENST00000577779	FDXR	P22570	491 aa		13.52	□□□□□ -0.25
PPP4R1-206	ENST00000577779	ARSF	P54793	590 aa		13.52	□□□□□ -0.25
PPP4R1-206	ENST00000577779	SLC25A11	Q02978	314 aa	Known RBP	13.52	□□□□□ -0.25
PPP4R1-206	ENST00000577779	PRKG2	Q13237	762 aa		13.52	□□□□□ -0.25
PPP4R1-206	ENST00000577779	DPCR1	Q3MIW9	517 aa		13.52	□□□□□ -0.25
PPP4R1-206	ENST00000577779	COX15	Q7KZN9	410 aa		13.52	□□□□□ -0.25
PPP4R1-206	ENST00000577779	PHC3	Q8NDX5	983 aa		13.52	□□□□□ -0.25
PPP4R1-206	ENST00000577779	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	13.52	□□□□□ -0.25
PPP4R1-206	ENST00000577779	SDCCAG3	Q96C92	435 aa		13.52	□□□□□ -0.25
PPP4R1-206	ENST00000577779	C8orf44	Q96CB5	159 aa		13.52	□□□□□ -0.25
PPP4R1-206	ENST00000577779	ZNF559	Q9BR84	538 aa		13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms