RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 NXPH3O95157 252 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 SNX4O95219 450 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 HIST1H2ABP04908 130 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 VPREB1P12018 145 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 APEHP13798 732 aaKnown RBP5.68□□□□□ -1.5
VPS53-219ENST00000576019 CYP11B2P19099 503 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 HIST1H2ADP20671 130 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 CD27P26842 260 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 RPA1P27694 616 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 EPHB2P29323 1055 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 PTGER1P34995 402 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 PEX19P40855 299 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 ACAA2P42765 397 aaKnown RBP5.68□□□□□ -1.5
VPS53-219ENST00000576019 FASLGP48023 281 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 KCNJ4P48050 445 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 BACE1P56817 501 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 NXPH1P58417 271 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 KCNJ10P78508 379 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 CFHR3Q02985 330 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 KLF10Q13118 480 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 BMPR2Q13873 1038 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 SLC39A14Q15043 492 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 SMN1Q16637 294 aaKnown RBP5.68□□□□□ -1.5
VPS53-219ENST00000576019 ATP13A5Q4VNC0 1218 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 RNASE12Q5GAN4 147 aaKnown RBP5.68□□□□□ -1.5
VPS53-219ENST00000576019 MDH1BQ5I0G3 518 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 CES5AQ6NT32 575 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 PCSK4Q6UW60 755 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 RANBP10Q6VN20 620 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 TMEM182Q6ZP80 229 aaPredicted RBP5.68□□□□□ -1.5
VPS53-219ENST00000576019 RGS9BPQ6ZS82 235 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 HIST3H2AQ7L7L0 130 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 ZNF551Q7Z340 670 aaPredicted RBP5.68□□□□□ -1.5
VPS53-219ENST00000576019 ADGRD2Q7Z7M1 963 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 TSPAN33Q86UF1 283 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 FAM124AQ86V42 546 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 WDR5BQ86VZ2 330 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 HACE1Q8IYU2 909 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 HUS1BQ8NHY5 278 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 CCDC110Q8TBZ0 833 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 ATP8B4Q8TF62 1192 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 BCL2L2Q92843 193 aaPredicted RBP5.68□□□□□ -1.5
VPS53-219ENST00000576019 SPSB1Q96BD6 273 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 SPACA9Q96E40 222 aaPredicted RBP5.68□□□□□ -1.5
VPS53-219ENST00000576019 CHFRQ96EP1 664 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 FRG2BQ96QU4 278 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 EGFL8Q99944 293 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 MEGF9Q9H1U4 602 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 PIGMQ9H3S5 423 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 KCNK15Q9H427 330 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 SEC61A2Q9H9S3 476 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 SYTL2Q9HCH5 934 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 EPB41L5Q9HCM4 733 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 PCMTD2Q9NV79 361 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 DNAJC11Q9NVH1 559 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 KCTD5Q9NXV2 234 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 EHD3Q9NZN3 535 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 LARSQ9P2J5 1176 aaKnown RBP5.68□□□□□ -1.5
VPS53-219ENST00000576019 DNAJB4Q9UDY4 337 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 IL17BQ9UHF5 180 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 CLIC4Q9Y696 253 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 UTP20O75691 2785 aaKnown RBP5.68□□□□□ -1.5
VPS53-219ENST00000576019 NBEAL1Q6ZS30 2694 aa5.68□□□□□ -1.5
VPS53-219ENST00000576019 FBN1P35555 2871 aaKnown RBP5.68□□□□□ -1.5
VPS53-219ENST00000576019 CELSR1Q9NYQ6 3014 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 TYW5A2RUC4 315 aaKnown RBP5.67□□□□□ -1.5
VPS53-219ENST00000576019 FAM157AC9JC47 383 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 KLRF2D3W0D1 207 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 CLIC1O00299 241 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 EBAG9O00559 213 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 RIPK2O43353 540 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 NME6O75414 186 aaPredicted RBP5.67□□□□□ -1.5
VPS53-219ENST00000576019 JRKO75564 520 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 CDKL5O76039 1030 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 LETM1O95202 739 aaPredicted RBP5.67□□□□□ -1.5
VPS53-219ENST00000576019 CD63P08962 238 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 LINGO3P0C6S8 592 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 PCNAP12004 261 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 CEACAM1P13688 526 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 MYF6P23409 242 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 PCSK6P29122 969 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 PBLDP30039 288 aaPredicted RBP5.67□□□□□ -1.5
VPS53-219ENST00000576019 RYKP34925 604 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 SLC16A2P36021 539 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 HNMTP50135 292 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 NAGLUP54802 743 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 EEFSECP57772 596 aaKnown RBP5.67□□□□□ -1.5
VPS53-219ENST00000576019 MRPS34P82930 218 aaKnown RBP5.67□□□□□ -1.5
VPS53-219ENST00000576019 PPP2R2BQ00005 443 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 LY6DQ14210 128 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 GPNMBQ14956 572 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 SGCBQ16585 318 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 USP41Q3LFD5 358 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 CXCL17Q6UXB2 119 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 MFSD7Q6UXD7 560 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 HTR3DQ70Z44 454 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 MIER3Q7Z3K6 550 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 SFTPA1Q8IWL2 248 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 TIGD4Q8IY51 512 aa5.67□□□□□ -1.5
VPS53-219ENST00000576019 ZBTB2Q8N680 514 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms