RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 IFITM10A6NMD0 228 aa4□□□□□ -1.77
NUP88-202ENST00000570937 TACC1O75410 805 aa4□□□□□ -1.77
NUP88-202ENST00000570937 MT-CYBP00156 380 aaPredicted RBP4□□□□□ -1.77
NUP88-202ENST00000570937 POLBP06746 335 aa4□□□□□ -1.77
NUP88-202ENST00000570937 MMP2P08253 660 aa4□□□□□ -1.77
NUP88-202ENST00000570937 ETFAP13804 333 aa4□□□□□ -1.77
NUP88-202ENST00000570937 GAP43P17677 238 aa4□□□□□ -1.77
NUP88-202ENST00000570937 ARF4P18085 180 aaPredicted RBP4□□□□□ -1.77
NUP88-202ENST00000570937 EDN2P20800 178 aa4□□□□□ -1.77
NUP88-202ENST00000570937 MT3P25713 68 aa4□□□□□ -1.77
NUP88-202ENST00000570937 POU1F1P28069 291 aa4□□□□□ -1.77
NUP88-202ENST00000570937 MARCKSP29966 332 aaPredicted RBP4□□□□□ -1.77
NUP88-202ENST00000570937 SSTR2P30874 369 aa4□□□□□ -1.77
NUP88-202ENST00000570937 HNRNPH1P31943 449 aaKnown RBP4□□□□□ -1.77
NUP88-202ENST00000570937 PPM1FP49593 454 aaPredicted RBP4□□□□□ -1.77
NUP88-202ENST00000570937 SLC12A3P55017 1021 aa4□□□□□ -1.77
NUP88-202ENST00000570937 PEX3P56589 373 aa4□□□□□ -1.77
NUP88-202ENST00000570937 NUCB2P80303 420 aa4□□□□□ -1.77
NUP88-202ENST00000570937 GIT2Q14161 759 aa4□□□□□ -1.77
NUP88-202ENST00000570937 KARSQ15046 597 aaKnown RBP4□□□□□ -1.77
NUP88-202ENST00000570937 EFNB3Q15768 340 aa4□□□□□ -1.77
NUP88-202ENST00000570937 KYAT1Q16773 422 aa4□□□□□ -1.77
NUP88-202ENST00000570937 HIST2H2ACQ16777 129 aaPredicted RBP4□□□□□ -1.77
NUP88-202ENST00000570937 PRICKLE4Q2TBC4 344 aa4□□□□□ -1.77
NUP88-202ENST00000570937 DCAF4L1Q3SXM0 396 aa4□□□□□ -1.77
NUP88-202ENST00000570937 WBP2NLQ6ICG8 309 aa4□□□□□ -1.77
NUP88-202ENST00000570937 SLC22A25Q6T423 547 aa4□□□□□ -1.77
NUP88-202ENST00000570937 STXBP4Q6ZWJ1 553 aa4□□□□□ -1.77
NUP88-202ENST00000570937 C1orf186Q6ZWK4 172 aa4□□□□□ -1.77
NUP88-202ENST00000570937 NOXA1Q86UR1 476 aa4□□□□□ -1.77
NUP88-202ENST00000570937 GPBP1Q86WP2 473 aa4□□□□□ -1.77
NUP88-202ENST00000570937 SCCPDHQ8NBX0 429 aa4□□□□□ -1.77
NUP88-202ENST00000570937 LINC00301Q8NCQ3 95 aa4□□□□□ -1.77
NUP88-202ENST00000570937 PPM1EQ8WY54 764 aa4□□□□□ -1.77
NUP88-202ENST00000570937 RAD54LQ92698 747 aa4□□□□□ -1.77
NUP88-202ENST00000570937 FBXL8Q96CD0 374 aa4□□□□□ -1.77
NUP88-202ENST00000570937 EPSTI1Q96J88 318 aa4□□□□□ -1.77
NUP88-202ENST00000570937 ZNF558Q96NG5 402 aa4□□□□□ -1.77
NUP88-202ENST00000570937 CASD1Q96PB1 797 aa4□□□□□ -1.77
NUP88-202ENST00000570937 ZNF385AQ96PM9 386 aaKnown RBP4□□□□□ -1.77
NUP88-202ENST00000570937 USP28Q96RU2 1077 aa4□□□□□ -1.77
NUP88-202ENST00000570937 PLIN2Q99541 437 aa4□□□□□ -1.77
NUP88-202ENST00000570937 TMEM175Q9BSA9 504 aa4□□□□□ -1.77
NUP88-202ENST00000570937 FZD8Q9H461 694 aa4□□□□□ -1.77
NUP88-202ENST00000570937 ZHX3Q9H4I2 956 aa4□□□□□ -1.77
NUP88-202ENST00000570937 MINDY3Q9H8M7 445 aa4□□□□□ -1.77
NUP88-202ENST00000570937 MAGEF1Q9HAY2 307 aa4□□□□□ -1.77
NUP88-202ENST00000570937 PARVGQ9HBI0 331 aa4□□□□□ -1.77
NUP88-202ENST00000570937 PLSCR4Q9NRQ2 329 aa4□□□□□ -1.77
NUP88-202ENST00000570937 CISD1Q9NZ45 108 aaKnown RBP4□□□□□ -1.77
NUP88-202ENST00000570937 SPG21Q9NZD8 308 aa4□□□□□ -1.77
NUP88-202ENST00000570937 FBXO2Q9UK22 296 aaPredicted RBP4□□□□□ -1.77
NUP88-202ENST00000570937 EXOC7Q9UPT5 735 aa4□□□□□ -1.77
NUP88-202ENST00000570937 MTCH2Q9Y6C9 303 aa4□□□□□ -1.77
NUP88-202ENST00000570937 COL6A3P12111 3177 aa4□□□□□ -1.77
NUP88-202ENST00000570937 SZT2Q5T011 3432 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 CHD9Q3L8U1 2897 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 GOLGA6L4A6NEF3 574 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 ARL5CA6NH57 179 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 SLC16A4O15374 487 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 CLDN3O15551 220 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 TPD52L2O43399 206 aaKnown RBP3.99□□□□□ -1.77
NUP88-202ENST00000570937 TRAPPC3O43617 180 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 ZIC3O60481 467 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 LDB3O75112 727 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 TOM1L1O75674 476 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 KRT36O76013 467 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 HNRNPA1P09651 372 aaKnown RBP eCLIP3.99□□□□□ -1.77
NUP88-202ENST00000570937 COX7A2P14406 83 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 ANP32AP39687 249 aaKnown RBP3.99□□□□□ -1.77
NUP88-202ENST00000570937 MATR3P43243 847 aaKnown RBP eCLIP3.99□□□□□ -1.77
NUP88-202ENST00000570937 GABRB2P47870 512 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 RAD23BP54727 409 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 UFM1P61960 85 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 MRPS5P82675 430 aaKnown RBP3.99□□□□□ -1.77
NUP88-202ENST00000570937 GRIK3Q13003 919 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 ITGADQ13349 1161 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 TDGQ13569 410 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 ALCAMQ13740 583 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 VEPH1Q14D04 833 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 GPR68Q15743 365 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 AMZ1Q400G9 498 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 ZNF672Q499Z4 452 aaPredicted RBP3.99□□□□□ -1.77
NUP88-202ENST00000570937 SGO1Q5FBB7 561 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 CLLU1OSQ5K130 101 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 ATF7IP2Q5U623 682 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 LRRC8EQ6NSJ5 796 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 FAM173BQ6P4H8 233 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 Q6ZTC4 211 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 LINGO2Q7L985 606 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 RRM2BQ7LG56 351 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 HAUS6Q7Z4H7 955 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 CUZD1Q86UP6 607 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 CEP57L1Q8IYX8 460 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 RFLNBQ8N5W9 214 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 COLGALT1Q8NBJ5 622 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 BEST2Q8NFU1 509 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 MRPS27Q92552 414 aaKnown RBP3.99□□□□□ -1.77
NUP88-202ENST00000570937 HTRA1Q92743 480 aa3.99□□□□□ -1.77
NUP88-202ENST00000570937 HVCN1Q96D96 273 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms